Detail information of GWHGAAZE031426


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08773.10unnamed protein product [Coffea canephora]
COGYP_003196572.12E-71caax prenyl protease 1
Swissprottr|Q8RX88|FACE1_ARATH0CAAX prenyl protease 1 homolog
trEMBLtr|A0A068UME5|A0A068UME5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313|EMBL:CDP08773.1}
TAIR10AT4G01320.10Peptidase family M48 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5874604258753119-
GWHAAZE00000009mRNA5874604258753119-
GWHAAZE00000009exon5874604258746158-
GWHAAZE00000009exon5874668058746745-
GWHAAZE00000009exon5874685858746929-
GWHAAZE00000009exon5874794358748056-
GWHAAZE00000009exon5874841258748504-
GWHAAZE00000009exon5874883458748896-
GWHAAZE00000009exon5874978158749891-
GWHAAZE00000009exon5874998558750098-
GWHAAZE00000009exon5875040858750483-
GWHAAZE00000009exon5875068558750740-
GWHAAZE00000009exon5875211758752212-
GWHAAZE00000009exon5875229558752379-
GWHAAZE00000009exon5875246858752615-
GWHAAZE00000009exon5875308958753119-
GWHAAZE00000009CDS5875308958753119-
GWHAAZE00000009CDS5875246858752615-
GWHAAZE00000009CDS5875229558752379-
GWHAAZE00000009CDS5875211758752212-
GWHAAZE00000009CDS5875068558750740-
GWHAAZE00000009CDS5875040858750483-
GWHAAZE00000009CDS5874998558750098-
GWHAAZE00000009CDS5874978158749891-
GWHAAZE00000009CDS5874883458748896-
GWHAAZE00000009CDS5874841258748504-
GWHAAZE00000009CDS5874794358748056-
GWHAAZE00000009CDS5874685858746929-
GWHAAZE00000009CDS5874668058746745-
GWHAAZE00000009CDS5874604258746158-
Transcript Sequence

Network for GWHGAAZE031426

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16491.6Peptidase_M48_N271991.30E-53
PF01435.19Peptidase_M482024072.10E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06013STE24 Biosynthesis of secondary metabolites map01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0071586biological_processCAAX-box protein processing
GO:0006508biological_processproteolysis
GO:0008233molecular_functionpeptidase activity
GO:0004222molecular_functionmetalloendopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf77.062
SRR3591706second leaf42.451
SRR3591707mature leaf37.519
SRR3591708Shoot apex81.225
SRR3591709Stem56.223
SRR3591710White floral bud52.806
SRR3591711White flower71.365
SRR3591712Green floral bud68.108
SRR3591713Yellow flower47.470
SRP173429 SRR8316895Juvenile bud stage 44.992
SRR8316896Juvenile bud stage 61.357
SRR8316897Juvenile bud stage 33.222
SRR8316894Third green stage 25.645
SRR8316900Third green stage 69.529
SRR8316901Third green stage 60.883
SRR8316898Complete white stage 22.683
SRR8316899Complete white stage 78.247
SRR8316903Complete white stage 40.419
SRR8316902Silver flowering stage25.182
SRR8316904Silver flowering stage40.070
SRR8316905Silver flowering stage14.720
SRR8316906Gold flowering stage 57.373
SRR8316907Gold flowering stage 58.784
SRR8316908Gold flowering stage 61.883
SRP132670SRR6706286Control20.020
SRR6706287Light intensity 50%18.309
SRR6706288Light intensity 20%22.030
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.719
CNS0095593Slightly white alabastrum(diploid) 245.738
CNS0095594Slightly white alabastrum(diploid) 343.781
CNS0095595Whole white alabastrum(diploid) 239.134
CNS0095596Whole white alabastrum(diploid) 340.226
CNS0095597Whole white alabastrum(diploid) 436.297
CNS0095598Silvery flower (diploied) 146.694
CNS0095599Silvery flower (diploied) 243.986
CNS0095600Silvery flower (diploied) 367.588
CNS0095601Golden flower (diploid) 137.534
CNS0095602Golden flower (diploid) 261.338
CNS0095603Golden flower (diploid) 359.896
CNS0095604Slightly white alabastrum(tetraploid) 146.406
CNS0095605Slightly white alabastrum(tetraploid) 244.185
CNS0095606Slightly white alabastrum(tetraploid) 373.712
CNS0095607Whole white alabastrum(tetraploid) 129.215
CNS0095608Whole white alabastrum(tetraploid) 221.806
CNS0095609Whole white alabastrum(tetraploid) 350.624
CNS0095610Silvery flower (tetraploid) 153.455
CNS0095611Silvery flower (tetraploid) 257.870
CNS0095612Silvery flower (tetraploid) 340.021
CNS0095613Golden flower (tetraploid) 124.922
CNS0095614Golden flower (tetraploid) 242.350
CNS0095615Golden flower (tetraploid) 343.166
CRA001975CRR073297Stem 135.442
CRR073298Stem 233.099
CRR073299Stem 331.869
CRR073300Leaf 130.807
CRR073301Leaf 229.791
CRR073302Leaf 334.812
CRR073303Juvenile bud 141.706
CRR073304Juvenile bud 228.898
CRR073305Juvenile bud 341.637
CRR073306Third green 18.551
CRR073307Third green 210.646
CRR073308Third green 39.981
CRR073309Second white 126.818
CRR073310Second white 225.958
CRR073311Second white 317.559
CRR073312Silver flowering 119.345
CRR073313Silver flowering 223.701
CRR073314Silver flowering 317.114
CRR073315Gold flowering 125.391
CRR073316Gold flowering 230.987
CRR073317Gold flowering 328.426
CRR073318Tawny withering 148.453
CRR073319Tawny withering 240.972
CRR073320Tawny withering 349.709