Gene detail

Detail information of GWHGAAZE031425

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002511906.1	0	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
COG	YP_003961248.1	8E-27	hypothetical protein
Swissprot	tr\|Q3EDL4\|Y1154_ARATH	0	Probable serine/threonine-protein kinase At1g01540
trEMBL	tr\|B9RDW7\|B9RDW7_RICCO	0	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative {ECO:0000313\|EMBL:EEF50575.1}
TAIR10	AT1G01540.2	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58736619	58741101	-
GWHAAZE00000009	mRNA	58736619	58741101	-
GWHAAZE00000009	exon	58740786	58741101	-
GWHAAZE00000009	exon	58740122	58740401	-
GWHAAZE00000009	exon	58739291	58739395	-
GWHAAZE00000009	exon	58738969	58739091	-
GWHAAZE00000009	exon	58738692	58738862	-
GWHAAZE00000009	exon	58738129	58738258	-
GWHAAZE00000009	exon	58737164	58737373	-
GWHAAZE00000009	exon	58736619	58737056	-
GWHAAZE00000009	CDS	58740786	58741101	-
GWHAAZE00000009	CDS	58740122	58740401	-
GWHAAZE00000009	CDS	58739291	58739395	-
GWHAAZE00000009	CDS	58738969	58739091	-
GWHAAZE00000009	CDS	58738692	58738862	-
GWHAAZE00000009	CDS	58738129	58738258	-
GWHAAZE00000009	CDS	58737164	58737373	-
GWHAAZE00000009	CDS	58736883	58737056	-
GWHAAZE00000009	three_prime_UTR	58736619	58736882	-

Transcript Sequence
>GWHTAAZE031461 ATGTCTGTATACGACGGAGCATTTGTAAACAGCGAGCTCTCGAAACCAACTTCAATCTTCGGTCTCCGATTATGGGTAGTAATAGGAATCTTCGTCGGGGCAATAATCGTGCTCATCCTCTTCCTCCTCTCTCTGTGCATCACCGCTCGCCGGAGGAGGTATCCCAAGCACAGCCACCGGCCAGAGAAGATCTCCGGCGCTGGAGGTGAACTGACTCCGGTTGTATCCAAAGAAATCCAGGAGATCGTGCACGATGCGGCGCCGGATCATAGACCGATTGTTCCTCACGCGGTGCCGGAGATCCAGATCGATATCGGTAAATCGGAGCATAGAGTTGTGTTCTCTGATCGGCAATCGAGTGGGGAGAGTAGGGGGACTAGTAGTGCAGCTGATACGGCATCGTTTGGAGGAGGTGGATCATTGCCGGAGGTGTCGCATCTAGGGTGGGGACGGTGGTACACTCTGAGAGAGCTTGAGGCGGCGACTAATGGATTGGCCGACGAGAATGTAATTGGTGAAGGTGGTTATGGGATAGTTTATAGTGGTATATTGGCCGATAATACTCGTGTAGCTGTGAAGAATTTGTTGAATAACAGGGGTCAAGCCGAGAAGGAGTTTAAAGTAGAGGTAGAAGTGATTGGACGCGTACGCCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAAGGAGCTTATAGGATGCTTGTTTATGAGTATGTAGACAATGGAAATTTGGACCAGTGGCTTCATGGAGATGTTGGGGATGTTAGCCCTTTAACGTGGAATATCCGTATGAATATCATATTGGGAACGGCAAAAGGCTTGGCCTATCTTCATGAGGGTCTTGAACCCAAGGTTGTTCACCGAGATATCAAAACTAGCAACATACTACTTGATCGTCAATGGAACTCGAAAGTGTCTGATTTTGGACTTGCTAAGCTCTTGTGTGCCGAGTCTAGTTATGTGACTACTCGTGTGATGGGTACATTTGGTTATGTTGCACCAGAATATGCTTGCACTGGTATGCTGAATGAGAAGAGTGACATTTATAGCTTTGGAATACTTATTATGGAGATCATCACAGGAAGAAGCCCAGTTGATTATAGTCGGCCACAAGGAGAGGTGAATTTGGTGGATTGGTTGAAAACAATGGTTGGAAACCGAAAATCTGAAGAAGTTGTGGATCCTAAGCTACCCGAAATGCCTGCTTCAAAAGCACTCAAACGTGTCCTTTTGGTTGCTCTTCGCTGTGTTGATCCGGATGCACAGAAACGGCCTAAAATGGGGCACGTAATCCACATGCTTGAAGCCGATGACTTATTATTTCGAGATGATAATAAAATTGGGCGAGAACCATCGCGTTCACATCGAGATTATAAAGAAGAGAATCGGGGCGGTCCAAAAATAGGTGAGAAACAGATTGTGGAAGTTGAAACCGATACAAGTGCAAGTGAAGGTGGTGATAGCAGTAGGAACCATAATCAGCAGCTGAGTAGTTGGAGATAAGTAACATAATTAACATGGGGGATGAGTTATATGCGACTAACTGTGGAGTTTTTGAATCTTACCTTGTGTATTTTTTCCTCCTTCTTCTACCTTGTAATTTGTTCTTCTTTAGCTTTTGGATGTGTACTCATAGTATATTATAATTCTTCAATTTTTTTTTTGAGTTCCATTTCTTTGTTGTCTACACGATTGGGATACATTTTGTAAAATTCAAGGAACCTATAACATCATTCTTTCATGAATTATACCAATTATATTGTTTGA

Network for GWHGAAZE031425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	167	434	1.70E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.807
	SRR3591706	second leaf	25.519
	SRR3591707	mature leaf	13.045
	SRR3591708	Shoot apex	33.990
	SRR3591709	Stem	41.046
	SRR3591710	White floral bud	27.682
	SRR3591711	White flower	9.968
	SRR3591712	Green floral bud	36.309
	SRR3591713	Yellow flower	1.833
SRP173429	SRR8316895	Juvenile bud stage	30.236
	SRR8316896	Juvenile bud stage	27.533
	SRR8316897	Juvenile bud stage	15.617
	SRR8316894	Third green stage	12.000
	SRR8316900	Third green stage	38.072
	SRR8316901	Third green stage	43.101
	SRR8316898	Complete white stage	13.954
	SRR8316899	Complete white stage	64.624
	SRR8316903	Complete white stage	22.719
	SRR8316902	Silver flowering stage	4.151
	SRR8316904	Silver flowering stage	5.367
	SRR8316905	Silver flowering stage	2.923
	SRR8316906	Gold flowering stage	2.764
	SRR8316907	Gold flowering stage	2.633
	SRR8316908	Gold flowering stage	2.590
SRP132670	SRR6706286	Control	40.385
	SRR6706287	Light intensity 50%	48.572
	SRR6706288	Light intensity 20%	57.390
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.747
	CNS0095593	Slightly white alabastrum(diploid) 2	35.959
	CNS0095594	Slightly white alabastrum(diploid) 3	25.527
	CNS0095595	Whole white alabastrum(diploid) 2	28.625
	CNS0095596	Whole white alabastrum(diploid) 3	29.203
	CNS0095597	Whole white alabastrum(diploid) 4	28.864
	CNS0095598	Silvery flower (diploied) 1	21.658
	CNS0095599	Silvery flower (diploied) 2	19.519
	CNS0095600	Silvery flower (diploied) 3	10.068
	CNS0095601	Golden flower (diploid) 1	14.212
	CNS0095602	Golden flower (diploid) 2	8.187
	CNS0095603	Golden flower (diploid) 3	8.910
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.994
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.713
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.131
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.948
	CNS0095610	Silvery flower (tetraploid) 1	7.031
	CNS0095611	Silvery flower (tetraploid) 2	4.422
	CNS0095612	Silvery flower (tetraploid) 3	4.271
	CNS0095613	Golden flower (tetraploid) 1	1.698
	CNS0095614	Golden flower (tetraploid) 2	4.526
	CNS0095615	Golden flower (tetraploid) 3	1.107
CRA001975	CRR073297	Stem 1	37.860
	CRR073298	Stem 2	31.514
	CRR073299	Stem 3	27.589
	CRR073300	Leaf 1	38.488
	CRR073301	Leaf 2	37.853
	CRR073302	Leaf 3	29.253
	CRR073303	Juvenile bud 1	32.570
	CRR073304	Juvenile bud 2	35.564
	CRR073305	Juvenile bud 3	53.630
	CRR073306	Third green 1	8.568
	CRR073307	Third green 2	11.186
	CRR073308	Third green 3	10.850
	CRR073309	Second white 1	0.683
	CRR073310	Second white 2	0.226
	CRR073311	Second white 3	0.415
	CRR073312	Silver flowering 1	0.281
	CRR073313	Silver flowering 2	0.226
	CRR073314	Silver flowering 3	0.442
	CRR073315	Gold flowering 1	47.830
	CRR073316	Gold flowering 2	57.416
	CRR073317	Gold flowering 3	20.936
	CRR073318	Tawny withering 1	52.456
	CRR073319	Tawny withering 2	37.643
	CRR073320	Tawny withering 3	56.598