Detail information of GWHGAAZE031413


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN75716.10hypothetical protein VITISV_007757 [Vitis vinifera]
COGYP_001958461.11E-26hypothetical protein Aasi_1443
Swissprottr|Q8VZJ9|CRCK2_ARATH9E-169Calmodulin-binding receptor-like cytoplasmic kinase 2
trEMBLtr|A5AIK5|A5AIK5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN75716.1}
TAIR10AT4G00330.18E-136calmodulin-binding receptor-like cytoplasmic kinase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5855330858557996+
GWHAAZE00000009mRNA5855330858557996+
GWHAAZE00000009exon5855330858553533+
GWHAAZE00000009exon5855532458555568+
GWHAAZE00000009exon5855568658555854+
GWHAAZE00000009exon5855595458556043+
GWHAAZE00000009exon5855644258556743+
GWHAAZE00000009exon5855734258557996+
GWHAAZE00000009CDS5855330858553533+
GWHAAZE00000009CDS5855532458555568+
GWHAAZE00000009CDS5855568658555854+
GWHAAZE00000009CDS5855595458556043+
GWHAAZE00000009CDS5855644258556743+
GWHAAZE00000009CDS5855734258557605+
GWHAAZE00000009three_prime_UTR5855760658557996+
Transcript Sequence

Network for GWHGAAZE031413

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
Protein Kinases RLK-Pelle_LRR-Xa family Protein Kinases RLK-Pelle_LRR-Xa
Protein Kinases RLK-Pelle_RLCK-IV family Protein Kinases RLK-Pelle_RLCK-IV
Transcription factor MADS-MIKC family Transcription factor MADS-MIKC
GO:0006783 heme biosynthetic process GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0005524 ATP binding GOslim:molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function
GO:0004325 ferrochelatase activity GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding GOslim:molecular_function
GO:0045944 positive regulation of transcription by RNA polymerase II GOslim:biological_process
GO:0042254 ribosome biogenesis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1303981.00E-50
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-IV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.270
SRR3591706second leaf9.020
SRR3591707mature leaf10.364
SRR3591708Shoot apex7.330
SRR3591709Stem25.688
SRR3591710White floral bud6.427
SRR3591711White flower7.551
SRR3591712Green floral bud6.408
SRR3591713Yellow flower9.068
SRP173429 SRR8316895Juvenile bud stage 8.620
SRR8316896Juvenile bud stage 11.359
SRR8316897Juvenile bud stage 3.299
SRR8316894Third green stage 4.305
SRR8316900Third green stage 6.357
SRR8316901Third green stage 7.917
SRR8316898Complete white stage 2.505
SRR8316899Complete white stage 9.600
SRR8316903Complete white stage 3.585
SRR8316902Silver flowering stage2.509
SRR8316904Silver flowering stage4.358
SRR8316905Silver flowering stage1.523
SRR8316906Gold flowering stage 9.957
SRR8316907Gold flowering stage 6.155
SRR8316908Gold flowering stage 11.534
SRP132670SRR6706286Control7.631
SRR6706287Light intensity 50%8.091
SRR6706288Light intensity 20%7.405
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.546
CNS0095593Slightly white alabastrum(diploid) 26.911
CNS0095594Slightly white alabastrum(diploid) 37.599
CNS0095595Whole white alabastrum(diploid) 25.564
CNS0095596Whole white alabastrum(diploid) 32.479
CNS0095597Whole white alabastrum(diploid) 44.401
CNS0095598Silvery flower (diploied) 17.765
CNS0095599Silvery flower (diploied) 24.688
CNS0095600Silvery flower (diploied) 35.194
CNS0095601Golden flower (diploid) 15.282
CNS0095602Golden flower (diploid) 27.086
CNS0095603Golden flower (diploid) 38.453
CNS0095604Slightly white alabastrum(tetraploid) 14.901
CNS0095605Slightly white alabastrum(tetraploid) 24.710
CNS0095606Slightly white alabastrum(tetraploid) 311.900
CNS0095607Whole white alabastrum(tetraploid) 12.850
CNS0095608Whole white alabastrum(tetraploid) 22.021
CNS0095609Whole white alabastrum(tetraploid) 36.036
CNS0095610Silvery flower (tetraploid) 15.169
CNS0095611Silvery flower (tetraploid) 24.030
CNS0095612Silvery flower (tetraploid) 34.342
CNS0095613Golden flower (tetraploid) 15.212
CNS0095614Golden flower (tetraploid) 25.750
CNS0095615Golden flower (tetraploid) 34.415
CRA001975CRR073297Stem 110.143
CRR073298Stem 28.006
CRR073299Stem 35.097
CRR073300Leaf 18.439
CRR073301Leaf 28.382
CRR073302Leaf 35.693
CRR073303Juvenile bud 13.832
CRR073304Juvenile bud 23.506
CRR073305Juvenile bud 34.795
CRR073306Third green 13.483
CRR073307Third green 22.853
CRR073308Third green 33.179
CRR073309Second white 10.994
CRR073310Second white 22.425
CRR073311Second white 32.215
CRR073312Silver flowering 15.576
CRR073313Silver flowering 25.543
CRR073314Silver flowering 34.978
CRR073315Gold flowering 121.935
CRR073316Gold flowering 223.674
CRR073317Gold flowering 316.449
CRR073318Tawny withering 124.625
CRR073319Tawny withering 222.105
CRR073320Tawny withering 330.637