Gene detail

Detail information of GWHGAAZE031396

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007051817.1	5.38658E-63	60S ribosomal protein L36 isoform 1 [Theobroma cacao]
Swissprot	tr\|O80929\|RL361_ARATH	1E-53	60S ribosomal protein L36-1
trEMBL	tr\|A0A061DT49\|A0A061DT49_THECC	2E-63	60S ribosomal protein L36 {ECO:0000256\|RuleBase:RU000665}
TAIR10	AT2G37600.2	2E-36	Ribosomal protein L36e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58346341	58348756	-
GWHAAZE00000009	mRNA	58346341	58348756	-
GWHAAZE00000009	exon	58348697	58348756	-
GWHAAZE00000009	exon	58347346	58347450	-
GWHAAZE00000009	exon	58346903	58347102	-
GWHAAZE00000009	exon	58346341	58346450	-
GWHAAZE00000009	five_prime_UTR	58348697	58348756	-
GWHAAZE00000009	five_prime_UTR	58347448	58347450	-
GWHAAZE00000009	CDS	58347346	58347447	-
GWHAAZE00000009	CDS	58346903	58347102	-
GWHAAZE00000009	CDS	58346420	58346450	-
GWHAAZE00000009	three_prime_UTR	58346341	58346419	-

Transcript Sequence
>GWHTAAZE031432 CACATCTCTCCCTTTGACATTTGTCATATTAGGGTTTAGCTCGCCGATCACTCTCTTGAGGTGATGGCTCCAAAACCACCAAAAACTGGCCTTGCTGTTGGTCTAAACAAAGGACATGTTGTAACTAGGAAAGAACTAGCACCTCGCCCTTCTGATAGAAAAGGGAAAACCAGCAAGAGAATACATTTTGTGAAGAGTGTGGTGAGAGAAGTTGCTGGGCTCGCTCCCTATGAGAAGAGAATCACCGAACTTCTTAAAGTTGGTAAAGACAAGCGTGCGTTGAAATTAGCTAAGCGAAAGTTGGGCACTCACAAGAGGGCAAAGAAGAAGCGTGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCCGCTGGAGGTGGTGAGAAGAAAAAGTGAGTTGCTGCTCCTGGTTCTTTTTTTTTTTTAATATGATTATGAGAATAGCTTTTAATGAGAAGTTTATTTACATTTTTAA

Network for GWHGAAZE031396

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01158.19	Ribosomal_L36e	8	101	1.00E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02920	RP-L36e, RPL36	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.946
	SRR3591706	second leaf	20.922
	SRR3591707	mature leaf	12.329
	SRR3591708	Shoot apex	104.659
	SRR3591709	Stem	29.084
	SRR3591710	White floral bud	16.931
	SRR3591711	White flower	33.302
	SRR3591712	Green floral bud	69.109
	SRR3591713	Yellow flower	12.000
SRP173429	SRR8316895	Juvenile bud stage	41.743
	SRR8316896	Juvenile bud stage	69.511
	SRR8316897	Juvenile bud stage	30.968
	SRR8316894	Third green stage	27.849
	SRR8316900	Third green stage	68.870
	SRR8316901	Third green stage	58.444
	SRR8316898	Complete white stage	1.782
	SRR8316899	Complete white stage	24.793
	SRR8316903	Complete white stage	6.981
	SRR8316902	Silver flowering stage	2.556
	SRR8316904	Silver flowering stage	2.333
	SRR8316905	Silver flowering stage	1.376
	SRR8316906	Gold flowering stage	4.892
	SRR8316907	Gold flowering stage	5.493
	SRR8316908	Gold flowering stage	5.425
SRP132670	SRR6706286	Control	90.269
	SRR6706287	Light intensity 50%	95.149
	SRR6706288	Light intensity 20%	104.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	116.269
	CNS0095593	Slightly white alabastrum(diploid) 2	125.887
	CNS0095594	Slightly white alabastrum(diploid) 3	109.804
	CNS0095595	Whole white alabastrum(diploid) 2	77.544
	CNS0095596	Whole white alabastrum(diploid) 3	112.009
	CNS0095597	Whole white alabastrum(diploid) 4	59.669
	CNS0095598	Silvery flower (diploied) 1	31.682
	CNS0095599	Silvery flower (diploied) 2	25.008
	CNS0095600	Silvery flower (diploied) 3	12.607
	CNS0095601	Golden flower (diploid) 1	19.696
	CNS0095602	Golden flower (diploid) 2	11.656
	CNS0095603	Golden flower (diploid) 3	11.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	95.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	98.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.402
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.924
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.578
	CNS0095610	Silvery flower (tetraploid) 1	10.030
	CNS0095611	Silvery flower (tetraploid) 2	9.164
	CNS0095612	Silvery flower (tetraploid) 3	7.045
	CNS0095613	Golden flower (tetraploid) 1	5.525
	CNS0095614	Golden flower (tetraploid) 2	12.393
	CNS0095615	Golden flower (tetraploid) 3	2.726
CRA001975	CRR073297	Stem 1	69.001
	CRR073298	Stem 2	76.277
	CRR073299	Stem 3	73.893
	CRR073300	Leaf 1	53.166
	CRR073301	Leaf 2	64.721
	CRR073302	Leaf 3	68.384
	CRR073303	Juvenile bud 1	56.749
	CRR073304	Juvenile bud 2	20.730
	CRR073305	Juvenile bud 3	34.235
	CRR073306	Third green 1	2.058
	CRR073307	Third green 2	3.039
	CRR073308	Third green 3	2.284
	CRR073309	Second white 1	1.868
	CRR073310	Second white 2	2.503
	CRR073311	Second white 3	1.213
	CRR073312	Silver flowering 1	0.690
	CRR073313	Silver flowering 2	1.273
	CRR073314	Silver flowering 3	1.562
	CRR073315	Gold flowering 1	12.614
	CRR073316	Gold flowering 2	20.136
	CRR073317	Gold flowering 3	13.819
	CRR073318	Tawny withering 1	54.393
	CRR073319	Tawny withering 2	50.675
	CRR073320	Tawny withering 3	51.874