Gene detail

Detail information of GWHGAAZE031389

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010255389.1	2.306E-178	PREDICTED: UPF0187 protein At3g61320, chloroplastic-like [Nelumbo nucifera]
COG	YP_631918.1	6E-27	hypothetical protein MXAN_3733
Swissprot	tr\|Q9M2D2\|YU88_ARATH	7E-158	UPF0187 protein At3g61320, chloroplastic (Precursor)
trEMBL	tr\|B9RDQ9\|B9RDQ9_RICCO	2E-174	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF50517.1}
TAIR10	AT3G61320.1	1E-115	Bestrophin-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58260202	58263043	+
GWHAAZE00000009	mRNA	58260202	58263043	+
GWHAAZE00000009	exon	58260202	58260903	+
GWHAAZE00000009	exon	58261422	58261589	+
GWHAAZE00000009	exon	58261807	58262039	+
GWHAAZE00000009	exon	58262680	58263043	+
GWHAAZE00000009	CDS	58260202	58260903	+
GWHAAZE00000009	CDS	58261422	58261589	+
GWHAAZE00000009	CDS	58261807	58262039	+
GWHAAZE00000009	CDS	58262680	58263043	+

Transcript Sequence
>GWHTAAZE031425 ATGACAACAAAACCCACAAGAACCCCACTCCAATCCTCCCCAAATTTATCCTCCCCTTCCCATTTTACCCTCACACCCCTTCCCAAATTACAACTACCCCAACCCCCCTTTCCCTCCAAACCCAACACCCTCAAACTCCTCTGCTGCCAACCCCCACAAACCCCAACCCCTTCTTCTTCCCCAAATCAATCCCTAACCCTAATTTCAATCCTCAATGCAATTCCCAATTGGGCTGATAGAATCAAAGAGAGGGGTATGCAACAGAATAGATCTCTGTACAACCATGAGGATTGGGTGACACATAGAAGTTCTTTGCGCCACCTTCGCCATTTCCTATCAAGCCTCAATTCCCGGGTGATCCTATCGTTGTTTCCGCCTGTGATTGTTTTTACGTCGGTGGCTATAGTTATAGCTAGTTACAATACTGCTGTTGAGATGAATTGGTTACCGGGTTTCTTCCCGGTTTTGAGGGCTTCTTCATTGCCTTATCAATTGACAGCCCCGGCTTTGGCCCTCTTGTTGGTGTTTAGAACAGAGGCTTCATATTCTAGGTTTGAAGAAGGGAGGAAGGCTTGGACTAAGGTCATTTCGGGGACTAATGATTTTGCTAGGCAAGTGATTGCCAGTGTGGAGAGTCCAAGTGATGGGTTGCTTAAGAAGGCGATTTTGCAGTATATTGTTGCGTTTCCAGTTGCTCTTAAGTGCCATTTGGTTTACGGCTCAGACATTGAGAAAGACCTTCAAAAGTTGCTTGAGGTTGATGATCTAGATGTAATTCTCAGCTCCAAGCACCGACCACGCTGCATTATTGAGTTCATCTCTCAAAGCCTCCAGTTGCTAAATATGGAGGAGTCGAAGCGGTCTGTTTTGGAATCAAAGATCTCTTGCTTCCATGATGGTATTGGAGTATGTGAACAGCTCATAAGCATACCGATTCCTCTGTCGTACACGCGCTTGACCTCAAGGTTTTTAGTACTGTGGCATTTCACCCTCCCTATTATACTTTGGGATGATTGCAACTGGATTGTGGTTCCTGCTACTTTTGTCAGTGCTGCTTCTTTGTTCTGCATTGAAGAGGTCTCTCTCTCTCTCTCTGCACGTGCAACATTCCCCCTCCCTCGCACACTACCCCATCCACCCAATGATCATTGTCTTAACGCGTTCAGTAAGCTTAGTCCAAATGGATCCACCAGGTTGTGCAATACTATGAATTTAGGCACTTTGATCCGAAGATTTGATCTGTTTTTTCATCTGGCAATGGAATTTTTGCAGGTGGGTGTTCTTATTGAGGAACCCTTTCCAATGCTGGCACTAGACAAGCTTTGCAAACTGGCTCATAGCAATATCAAGGAAGCAATGACAAATGAGGAAATGATCAGAGAACAACTTATTTCGAAAAGAAAACGCTATTCTGTGGAGAACTTGCCAAATGGTCACCCTCTTAAGCACACAGAGAACTTATCATAA

Network for GWHGAAZE031389

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01062.22	Bestrophin	101	364	8.20E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.804
	SRR3591706	second leaf	15.489
	SRR3591707	mature leaf	38.769
	SRR3591708	Shoot apex	12.728
	SRR3591709	Stem	10.808
	SRR3591710	White floral bud	4.457
	SRR3591711	White flower	7.208
	SRR3591712	Green floral bud	6.617
	SRR3591713	Yellow flower	4.100
SRP173429	SRR8316895	Juvenile bud stage	4.125
	SRR8316896	Juvenile bud stage	8.185
	SRR8316897	Juvenile bud stage	2.786
	SRR8316894	Third green stage	3.125
	SRR8316900	Third green stage	7.102
	SRR8316901	Third green stage	7.388
	SRR8316898	Complete white stage	1.141
	SRR8316899	Complete white stage	8.093
	SRR8316903	Complete white stage	3.807
	SRR8316902	Silver flowering stage	2.040
	SRR8316904	Silver flowering stage	2.812
	SRR8316905	Silver flowering stage	1.335
	SRR8316906	Gold flowering stage	4.898
	SRR8316907	Gold flowering stage	4.580
	SRR8316908	Gold flowering stage	7.281
SRP132670	SRR6706286	Control	8.268
	SRR6706287	Light intensity 50%	7.960
	SRR6706288	Light intensity 20%	7.688
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.527
	CNS0095593	Slightly white alabastrum(diploid) 2	3.750
	CNS0095594	Slightly white alabastrum(diploid) 3	4.072
	CNS0095595	Whole white alabastrum(diploid) 2	4.875
	CNS0095596	Whole white alabastrum(diploid) 3	3.342
	CNS0095597	Whole white alabastrum(diploid) 4	3.905
	CNS0095598	Silvery flower (diploied) 1	7.311
	CNS0095599	Silvery flower (diploied) 2	4.086
	CNS0095600	Silvery flower (diploied) 3	4.741
	CNS0095601	Golden flower (diploid) 1	4.842
	CNS0095602	Golden flower (diploid) 2	7.195
	CNS0095603	Golden flower (diploid) 3	5.756
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.768
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.457
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.687
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.502
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.848
	CNS0095610	Silvery flower (tetraploid) 1	7.096
	CNS0095611	Silvery flower (tetraploid) 2	7.606
	CNS0095612	Silvery flower (tetraploid) 3	4.212
	CNS0095613	Golden flower (tetraploid) 1	5.133
	CNS0095614	Golden flower (tetraploid) 2	7.199
	CNS0095615	Golden flower (tetraploid) 3	4.020
CRA001975	CRR073297	Stem 1	13.479
	CRR073298	Stem 2	10.358
	CRR073299	Stem 3	10.656
	CRR073300	Leaf 1	9.211
	CRR073301	Leaf 2	9.176
	CRR073302	Leaf 3	7.862
	CRR073303	Juvenile bud 1	8.152
	CRR073304	Juvenile bud 2	4.774
	CRR073305	Juvenile bud 3	9.870
	CRR073306	Third green 1	1.500
	CRR073307	Third green 2	1.402
	CRR073308	Third green 3	1.832
	CRR073309	Second white 1	4.013
	CRR073310	Second white 2	5.315
	CRR073311	Second white 3	4.202
	CRR073312	Silver flowering 1	3.242
	CRR073313	Silver flowering 2	4.388
	CRR073314	Silver flowering 3	1.531
	CRR073315	Gold flowering 1	32.757
	CRR073316	Gold flowering 2	36.497
	CRR073317	Gold flowering 3	35.287
	CRR073318	Tawny withering 1	7.015
	CRR073319	Tawny withering 2	7.038
	CRR073320	Tawny withering 3	10.403