Gene detail

Detail information of GWHGAAZE031378

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010273108.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 8 [Nelumbo nucifera]
COG	YP_003640197.1	3E-78	DEAD/DEAH box helicase
Swissprot	tr\|Q8RXK6\|RH8_ARATH	0	DEAD-box ATP-dependent RNA helicase 8
trEMBL	tr\|A0A067KA17\|A0A067KA17_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28654.1}
TAIR10	AT4G00660.2	0	RNAhelicase-like 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58111780	58118332	+
GWHAAZE00000009	mRNA	58111780	58118332	+
GWHAAZE00000009	exon	58111780	58112006	+
GWHAAZE00000009	exon	58112661	58112747	+
GWHAAZE00000009	exon	58113780	58113840	+
GWHAAZE00000009	exon	58114795	58115029	+
GWHAAZE00000009	exon	58115418	58115656	+
GWHAAZE00000009	exon	58115763	58115822	+
GWHAAZE00000009	exon	58117185	58117436	+
GWHAAZE00000009	exon	58117511	58117691	+
GWHAAZE00000009	exon	58117912	58118000	+
GWHAAZE00000009	exon	58118089	58118162	+
GWHAAZE00000009	exon	58118254	58118332	+
GWHAAZE00000009	CDS	58111780	58112006	+
GWHAAZE00000009	CDS	58112661	58112747	+
GWHAAZE00000009	CDS	58113780	58113840	+
GWHAAZE00000009	CDS	58114795	58115029	+
GWHAAZE00000009	CDS	58115418	58115656	+
GWHAAZE00000009	CDS	58115763	58115822	+
GWHAAZE00000009	CDS	58117185	58117436	+
GWHAAZE00000009	CDS	58117511	58117691	+
GWHAAZE00000009	CDS	58117912	58118000	+
GWHAAZE00000009	CDS	58118089	58118162	+
GWHAAZE00000009	CDS	58118254	58118332	+

Transcript Sequence
>GWHTAAZE031414 ATGAACACAAGAGGGAGGTATCCGCCGGGAATTGGAGGTGGCCGTGGGAACATGCACGGAAACCCTAATTTTCAACCTAGAAACCCTCAGCAGTATGTGCAGAGGAGTCCAATGCAGAATCACCAGCAATTTCAGCAGCAACAATGGCTGAGAAGGAATCAATTAGGGGACTATTCTGGTGCTGAAGAAGATGAGAAGACGATACAGTCTGGTGCTATCGATTCGAGTGGTGCATCATATAGGAGATTGAGTGAGGGATCAGAGTTGTGGGAGATTGGAGGTGATCAAAGAAATTGCCAAATTGAGAAGATATGTTCACAAGATTGGAAGGCCAAGTTGAAGCTTCCACCAGCTGATAATCGGTATAAGACAGAGGACGTGACAGCAACTAAAGGAAATGAATTTGAGGACTATTTTCTGAAACGCGAGCTACTTATGGGAATATACGAAAAAGGTTTTGAGAGGCCGTCTCCTATTCAGGAGGAAAGTATTCCCATTGCTCTAACTGGAAGTGACATTCTTGCTCGAGCTAAAAATGGGACTGGTAAAACAGCAGCATTTTGCATCCCTGCCTTGGAAAGAATTGATCAAGATAACAATGTTATTCAAGTTGTTATACTTGTTCCGACCCGAGAGCTGGCTCTTCAGACTTCACAAGTTTGTAAGGAACTTGGAAAGCACTTGAAAATTCAAGTAATGGTTACTACTGGTGGAACTAGCCTAAAAGATGACATAATGCGTCTTTATCAGCCTGTTCATTTACTTGTTGGTACTCCGGGAAGAATACTAGATCTTGCAAAAAAGGGTGTATGCATTTTGAAAGATTGTGCAATGCTTGTTATGGATGAGACCCCAGGCTCACAAACCCCCAGCTTTACATCTGGCTCGGGGTCAGCAGAGGCTCCTACGGCTGATAAACTTTTGTCGCCAGAGTTCCAACCATCAGTAGAGCAGCTCATCAACTTTATGGCTACTAATCGTCAAATTTTGATGTTTTCTGCCACATTTCCTGTGACGGTTAAGGATTTCAAAGATAGATATTTAAATAAGCCATATGTGATTAACCTTATGGACGAGCTCACTCTTAAGGGAATAACACAGTATTATGCATTCGTGGAGGAAAGGCAGAAAGTTCACTGCCTTAACACTCTTTTCTCAAAGCTTCAAATCAACCAATCCATCATTTTTTGCAATTCTGTAAATCGGGTGGAACTGCTTGCCAAGAAGATTACAGAGCTTGGTTACTCTTGCTTTTATATCCATGCGAAGATGCTTCAAGATCATCGCAACAGAGTATTTCATGATTTCCGTAATGGCGCATGCAGGAATCTTGTTTGTACTGATTTGTTTACAAGGGGAATAGATATTCAAGCGGTCAACGTTGTTATTAATTTCGATTTTCCTAAGAACTCAGAAACATATCTGCACAGGGTCGGTCGATCAGGAAGATTTGGACACCTTGGACTGGCTGTGAATTTGATTACTTATGAGGACCGCTTCAATTTGTACAGGATTGAACAAGAACTTGGGACTGAGATAAAGCAAATTCCTCCTCATATAGATCAGGCTATTTACTGCAGATGA

Network for GWHGAAZE031378

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	158	285	1.40E-32
PF00271.32	Helicase_C	379	485	7.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12614	DDX6, RCK, DHH1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.665
	SRR3591706	second leaf	15.245
	SRR3591707	mature leaf	17.233
	SRR3591708	Shoot apex	20.963
	SRR3591709	Stem	20.010
	SRR3591710	White floral bud	28.363
	SRR3591711	White flower	31.253
	SRR3591712	Green floral bud	30.026
	SRR3591713	Yellow flower	34.669
SRP173429	SRR8316895	Juvenile bud stage	16.144
	SRR8316896	Juvenile bud stage	23.715
	SRR8316897	Juvenile bud stage	10.684
	SRR8316894	Third green stage	10.620
	SRR8316900	Third green stage	30.288
	SRR8316901	Third green stage	25.225
	SRR8316898	Complete white stage	12.905
	SRR8316899	Complete white stage	34.513
	SRR8316903	Complete white stage	18.299
	SRR8316902	Silver flowering stage	10.789
	SRR8316904	Silver flowering stage	15.680
	SRR8316905	Silver flowering stage	8.589
	SRR8316906	Gold flowering stage	29.128
	SRR8316907	Gold flowering stage	27.391
	SRR8316908	Gold flowering stage	25.103
SRP132670	SRR6706286	Control	12.566
	SRR6706287	Light intensity 50%	13.914
	SRR6706288	Light intensity 20%	14.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.373
	CNS0095593	Slightly white alabastrum(diploid) 2	14.392
	CNS0095594	Slightly white alabastrum(diploid) 3	13.300
	CNS0095595	Whole white alabastrum(diploid) 2	12.626
	CNS0095596	Whole white alabastrum(diploid) 3	12.429
	CNS0095597	Whole white alabastrum(diploid) 4	12.216
	CNS0095598	Silvery flower (diploied) 1	15.804
	CNS0095599	Silvery flower (diploied) 2	13.235
	CNS0095600	Silvery flower (diploied) 3	24.827
	CNS0095601	Golden flower (diploid) 1	13.147
	CNS0095602	Golden flower (diploid) 2	22.919
	CNS0095603	Golden flower (diploid) 3	24.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.935
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.686
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.370
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.493
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.547
	CNS0095610	Silvery flower (tetraploid) 1	25.222
	CNS0095611	Silvery flower (tetraploid) 2	28.880
	CNS0095612	Silvery flower (tetraploid) 3	25.637
	CNS0095613	Golden flower (tetraploid) 1	15.789
	CNS0095614	Golden flower (tetraploid) 2	22.477
	CNS0095615	Golden flower (tetraploid) 3	26.905
CRA001975	CRR073297	Stem 1	8.809
	CRR073298	Stem 2	8.333
	CRR073299	Stem 3	8.318
	CRR073300	Leaf 1	9.783
	CRR073301	Leaf 2	8.088
	CRR073302	Leaf 3	5.584
	CRR073303	Juvenile bud 1	6.395
	CRR073304	Juvenile bud 2	6.173
	CRR073305	Juvenile bud 3	7.160
	CRR073306	Third green 1	3.550
	CRR073307	Third green 2	2.525
	CRR073308	Third green 3	3.480
	CRR073309	Second white 1	6.238
	CRR073310	Second white 2	7.111
	CRR073311	Second white 3	6.954
	CRR073312	Silver flowering 1	9.249
	CRR073313	Silver flowering 2	8.615
	CRR073314	Silver flowering 3	5.556
	CRR073315	Gold flowering 1	4.728
	CRR073316	Gold flowering 2	5.939
	CRR073317	Gold flowering 3	3.198
	CRR073318	Tawny withering 1	5.284
	CRR073319	Tawny withering 2	5.566
	CRR073320	Tawny withering 3	5.284