Gene detail

Detail information of GWHGAAZE031368

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11266.1	4.0175E-157	unnamed protein product [Coffea canephora]
COG	YP_003888420.1	8E-48	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	1E-147	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A068US79\|A0A068US79_COFCA	1E-157	Coffea canephora DH200=94 genomic scaffold, scaffold_53 {ECO:0000313\|EMBL:CDP11266.1}
TAIR10	AT3G61220.1	4E-118	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57952264	57956876	+
GWHAAZE00000009	mRNA	57952264	57956876	+
GWHAAZE00000009	exon	57952264	57952298	+
GWHAAZE00000009	exon	57952413	57952665	+
GWHAAZE00000009	exon	57954817	57954891	+
GWHAAZE00000009	exon	57955988	57956167	+
GWHAAZE00000009	exon	57956496	57956876	+
GWHAAZE00000009	CDS	57952264	57952298	+
GWHAAZE00000009	CDS	57952413	57952665	+
GWHAAZE00000009	CDS	57954817	57954891	+
GWHAAZE00000009	CDS	57955988	57956167	+
GWHAAZE00000009	CDS	57956496	57956876	+

Transcript Sequence
>GWHTAAZE031404 ATGGCAGAAGCAATCCCCCAAACACCATCAAAGAGGTATGCAGTGGTTACAGGGGCAAATAAAGGGATAGGATTGGAAATTTGTAAGCAATTGGCTTCAAAAGGGGTTACTGTAGTGTTAACAGCTAGAGATGAAAAGAGGGGAATTGAAGCCCTTGAAAAATTGAAAGGAGAGTTTGATGGTATCTCTGATTATTTGCTCTTTCATCAGCTTGATGTGGAGGATCCATCCAGTATTCATTCTCTTGCTGATTTTATCAAGACCCAATTTGGAAAACTAGATATCTTGGTGAATAATGCAGGGATTGGTGGAGCGATAGTAGATGCCGAAGCTTTTAAAGCTGTAGCAGGTAGTGCTGGTGGGGCAGCTAGAGAGCAAATCAAATGGAATGAAATAATGACTGAGACTTACGAGATAGCAGTGAAATGCCTGCAAACAAACTACTATGGTGCAAAGAGAATGATTGAAGCACATCTTCCCCTCCTCCACTTATCCGACTCTCCGAGGATTGTAAATGTATCGTCTTCCATGGGAAAGTTAAAGAATATACCGAATGAATGGGCCAAAGGAGTGCTAAGCGATGCCGATAACTTGACAGAAGAGAGAGTGGATGATGTCCTAAGTGAGTTTCTCAAAGATTTCAAAGAAGGAACACTAGAAGCAAAAGGCTGGCCTCAATTTTTATCAGCATATACTGTCTCAAAAGCAGCCATGAATGCCTACACAAGGATTATTGCCAAAAAATACCCAAATTTTCGCATTAATTGCGTTTGCCCCGGCTATGTGAAGACGGATATAAACTTCAATACGGGCATGTTGACTGTGGAAGAAGGCGCCCAAGGCCCGGTGAAGTTAGCGTTGCTTCCTGATGGCAGCCCCACCGGCCTTTTCTTCTTTCGGAACGAGGTGGCACCTTTTGAGTGA

Network for GWHGAAZE031368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	13	181	5.80E-27
PF13561.7	adh_short_C2	222	267	2.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.097
	SRR3591706	second leaf	14.762
	SRR3591707	mature leaf	79.560
	SRR3591708	Shoot apex	4.789
	SRR3591709	Stem	7.063
	SRR3591710	White floral bud	1.861
	SRR3591711	White flower	2.539
	SRR3591712	Green floral bud	1.130
	SRR3591713	Yellow flower	1.004
SRP173429	SRR8316895	Juvenile bud stage	6.353
	SRR8316896	Juvenile bud stage	18.952
	SRR8316897	Juvenile bud stage	2.730
	SRR8316894	Third green stage	2.506
	SRR8316900	Third green stage	11.356
	SRR8316901	Third green stage	21.400
	SRR8316898	Complete white stage	8.504
	SRR8316899	Complete white stage	7.860
	SRR8316903	Complete white stage	10.951
	SRR8316902	Silver flowering stage	5.917
	SRR8316904	Silver flowering stage	8.682
	SRR8316905	Silver flowering stage	4.922
	SRR8316906	Gold flowering stage	12.307
	SRR8316907	Gold flowering stage	8.856
	SRR8316908	Gold flowering stage	11.233
SRP132670	SRR6706286	Control	11.811
	SRR6706287	Light intensity 50%	7.385
	SRR6706288	Light intensity 20%	5.230
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.040
	CNS0095593	Slightly white alabastrum(diploid) 2	3.257
	CNS0095594	Slightly white alabastrum(diploid) 3	11.637
	CNS0095595	Whole white alabastrum(diploid) 2	7.391
	CNS0095596	Whole white alabastrum(diploid) 3	5.453
	CNS0095597	Whole white alabastrum(diploid) 4	5.092
	CNS0095598	Silvery flower (diploied) 1	15.690
	CNS0095599	Silvery flower (diploied) 2	15.226
	CNS0095600	Silvery flower (diploied) 3	17.150
	CNS0095601	Golden flower (diploid) 1	14.068
	CNS0095602	Golden flower (diploid) 2	18.393
	CNS0095603	Golden flower (diploid) 3	16.870
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.818
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.098
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.095
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.098
	CNS0095610	Silvery flower (tetraploid) 1	54.080
	CNS0095611	Silvery flower (tetraploid) 2	43.903
	CNS0095612	Silvery flower (tetraploid) 3	24.851
	CNS0095613	Golden flower (tetraploid) 1	37.103
	CNS0095614	Golden flower (tetraploid) 2	43.156
	CNS0095615	Golden flower (tetraploid) 3	9.116
CRA001975	CRR073297	Stem 1	8.370
	CRR073298	Stem 2	7.511
	CRR073299	Stem 3	6.246
	CRR073300	Leaf 1	4.503
	CRR073301	Leaf 2	4.323
	CRR073302	Leaf 3	3.064
	CRR073303	Juvenile bud 1	3.657
	CRR073304	Juvenile bud 2	3.661
	CRR073305	Juvenile bud 3	2.840
	CRR073306	Third green 1	0.763
	CRR073307	Third green 2	2.746
	CRR073308	Third green 3	2.044
	CRR073309	Second white 1	4.404
	CRR073310	Second white 2	5.964
	CRR073311	Second white 3	4.199
	CRR073312	Silver flowering 1	1.107
	CRR073313	Silver flowering 2	3.040
	CRR073314	Silver flowering 3	1.972
	CRR073315	Gold flowering 1	51.091
	CRR073316	Gold flowering 2	44.769
	CRR073317	Gold flowering 3	30.847
	CRR073318	Tawny withering 1	16.075
	CRR073319	Tawny withering 2	31.211
	CRR073320	Tawny withering 3	10.604