Gene detail

Detail information of GWHGAAZE031360

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278583.1	0	PREDICTED: shaggy-related protein kinase epsilon-like [Nelumbo nucifera]
COG	YP_003265973.1	2E-23	serine/threonine protein kinase
Swissprot	tr\|Q96287\|KSG8_ARATH	0	Shaggy-related protein kinase theta
trEMBL	tr\|D7U7I5\|D7U7I5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38764.3}
TAIR10	AT4G00720.1	0	shaggy-like protein kinase 32

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57838750	57844003	+
GWHAAZE00000009	mRNA	57838750	57844003	+
GWHAAZE00000009	exon	57838750	57838809	+
GWHAAZE00000009	exon	57840246	57840500	+
GWHAAZE00000009	exon	57840620	57840712	+
GWHAAZE00000009	exon	57841242	57841301	+
GWHAAZE00000009	exon	57841419	57841691	+
GWHAAZE00000009	exon	57841819	57841893	+
GWHAAZE00000009	exon	57842183	57842239	+
GWHAAZE00000009	exon	57842320	57842460	+
GWHAAZE00000009	exon	57842673	57842723	+
GWHAAZE00000009	exon	57842838	57842933	+
GWHAAZE00000009	exon	57843111	57843194	+
GWHAAZE00000009	exon	57843755	57843857	+
GWHAAZE00000009	exon	57843942	57844003	+
GWHAAZE00000009	CDS	57838750	57838809	+
GWHAAZE00000009	CDS	57840246	57840500	+
GWHAAZE00000009	CDS	57840620	57840712	+
GWHAAZE00000009	CDS	57841242	57841301	+
GWHAAZE00000009	CDS	57841419	57841691	+
GWHAAZE00000009	CDS	57841819	57841893	+
GWHAAZE00000009	CDS	57842183	57842239	+
GWHAAZE00000009	CDS	57842320	57842460	+
GWHAAZE00000009	CDS	57842673	57842723	+
GWHAAZE00000009	CDS	57842838	57842933	+
GWHAAZE00000009	CDS	57843111	57843194	+
GWHAAZE00000009	CDS	57843755	57843857	+
GWHAAZE00000009	CDS	57843942	57844003	+

Transcript Sequence
>GWHTAAZE031396 ATGAATGTTATGCGTAGGCTCAAGAGTATTGCTTCTGGCCGATCCTCCGTTTCAGATCCTGGTGGGGATTCTAGCATAAAGAGGGTAAAGGTTGAGCAGGAAGTAGATCGAAACGTTACTGGTGAATCTCAGTCGATGGAGAAATCTTCCACGGCTATAGAGCACCATATGGCTTCTACCTCAGTGGGAAATGCAGCAAGCACATCTACTGTATCTTCAATGGTTAGATCTGAAAAATCTGGCTATGACGAGCTTCCTAAAGAAATGCATGAAATGAAAATCAGAGAGGAGAAATCGGATAACAATGAGGATAAGGAGATCGAAACCACTCTTGTTAGGGGTAGTGGAACAGAAGCAGGTCAGATAATTACTACTACAGTGGCTGGTCGAAATGGACAAGAAAAACTGACCATGTCGTACATGGCGGAGCGTGTTGTTGGAACTGGCTCTTTCGGTGTTGTCTTTCAGGCCAAGTGCATGGAAACTAGCGATACTGTTGCTATAAAGAAGGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTCCAGATTATGCGCTTACTTGGTCATCCCAATGTTGTTCAACTTAAGCACTGTTTCTATTCAACTACTGAAAAAGAAGAGGTGTACCTTAACCTTGTCCTTGAGTATGTATCTGAAACAGTCTACCGGGTTTCAAGGCACTACAGCCGGATGAATCAGCATATGCCAATTATATATGTACAACTGTACACATACCAGATTTGTCGTGCTCTTAACTATATACACAATGTTATCGGTGTATGTCATCGCGATATTAAGCCACAGAATCTATTGGTCAATCCCCACACGCATCAGCTAAAGCTATGTGATTTTGGGAGTGCAAAGATGCTGGTGCCTGGTGAACCCAATATTTCATACATCTGTTCACGGTATTATAGGGCTCCAGAACTGATCTTCGGGGCTACAGAATACACCACTGCAATTGATATGTGGTCTACTGGTTGCGTTTTGGCTGAGCTTCTTCTCGGGCGGCCTCTCTTTCCAGGTGAAAGTGGTGTAGATCAATTGGTGGAAGTCATTAAGATTTTGGGGACACCAACCAGAGAGGAAATCAAGTGTATGAATCCGCATTACACTGAGTTCAAGTTTCCGCAAATCAAAGCTCATCCATGGCATAAGGTATTTCACAAGCGATTGCCGTCTGAGGCGGTGGATCTTGTATCAAGGCTGCTCCAGTATTCACCAAAGCTACGTTGCACACCTTTGGAAGCATGTGCGCACCCTTTCTTCGACAATCTGAGGGACCCAAATACATCCTTACCCAACGGCCGGCCCCTTCCTCCTTTATTTGACTTCACACCTCAAGAGCTTGATGGTGCATCTCCTGAACTGCGTCAACGTCTCGTCCCTGAGCACTCAAAGAAATGA

Network for GWHGAAZE031360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	140	424	2.60E-64

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_GSK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.448
	SRR3591706	second leaf	55.346
	SRR3591707	mature leaf	66.775
	SRR3591708	Shoot apex	70.236
	SRR3591709	Stem	92.206
	SRR3591710	White floral bud	142.715
	SRR3591711	White flower	90.266
	SRR3591712	Green floral bud	94.438
	SRR3591713	Yellow flower	113.467
SRP173429	SRR8316895	Juvenile bud stage	48.035
	SRR8316896	Juvenile bud stage	62.516
	SRR8316897	Juvenile bud stage	40.635
	SRR8316894	Third green stage	27.781
	SRR8316900	Third green stage	83.967
	SRR8316901	Third green stage	75.134
	SRR8316898	Complete white stage	37.232
	SRR8316899	Complete white stage	104.441
	SRR8316903	Complete white stage	57.916
	SRR8316902	Silver flowering stage	44.231
	SRR8316904	Silver flowering stage	58.616
	SRR8316905	Silver flowering stage	29.381
	SRR8316906	Gold flowering stage	107.177
	SRR8316907	Gold flowering stage	95.080
	SRR8316908	Gold flowering stage	118.774
SRP132670	SRR6706286	Control	62.039
	SRR6706287	Light intensity 50%	62.473
	SRR6706288	Light intensity 20%	61.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.201
	CNS0095593	Slightly white alabastrum(diploid) 2	58.570
	CNS0095594	Slightly white alabastrum(diploid) 3	54.401
	CNS0095595	Whole white alabastrum(diploid) 2	67.867
	CNS0095596	Whole white alabastrum(diploid) 3	61.397
	CNS0095597	Whole white alabastrum(diploid) 4	77.050
	CNS0095598	Silvery flower (diploied) 1	54.161
	CNS0095599	Silvery flower (diploied) 2	64.083
	CNS0095600	Silvery flower (diploied) 3	81.812
	CNS0095601	Golden flower (diploid) 1	58.227
	CNS0095602	Golden flower (diploid) 2	93.679
	CNS0095603	Golden flower (diploid) 3	94.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.210
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.186
	CNS0095607	Whole white alabastrum(tetraploid) 1	70.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	88.250
	CNS0095609	Whole white alabastrum(tetraploid) 3	65.341
	CNS0095610	Silvery flower (tetraploid) 1	78.257
	CNS0095611	Silvery flower (tetraploid) 2	61.898
	CNS0095612	Silvery flower (tetraploid) 3	102.635
	CNS0095613	Golden flower (tetraploid) 1	60.893
	CNS0095614	Golden flower (tetraploid) 2	73.703
	CNS0095615	Golden flower (tetraploid) 3	82.160
CRA001975	CRR073297	Stem 1	96.118
	CRR073298	Stem 2	87.041
	CRR073299	Stem 3	76.578
	CRR073300	Leaf 1	107.554
	CRR073301	Leaf 2	97.699
	CRR073302	Leaf 3	80.058
	CRR073303	Juvenile bud 1	102.145
	CRR073304	Juvenile bud 2	74.812
	CRR073305	Juvenile bud 3	92.548
	CRR073306	Third green 1	117.579
	CRR073307	Third green 2	104.431
	CRR073308	Third green 3	111.991
	CRR073309	Second white 1	94.029
	CRR073310	Second white 2	123.982
	CRR073311	Second white 3	109.378
	CRR073312	Silver flowering 1	159.553
	CRR073313	Silver flowering 2	150.404
	CRR073314	Silver flowering 3	146.246
	CRR073315	Gold flowering 1	60.392
	CRR073316	Gold flowering 2	67.860
	CRR073317	Gold flowering 3	45.944
	CRR073318	Tawny withering 1	134.813
	CRR073319	Tawny withering 2	115.766
	CRR073320	Tawny withering 3	110.020