Gene detail

Detail information of GWHGAAZE031344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002511773.1	0	phospholipase d beta, putative [Ricinus communis]
COG	YP_003981721.1	1E-27	phospholipase D
Swissprot	tr\|P93733\|PLDB1_ARATH	0	Phospholipase D beta 1
trEMBL	tr\|B9RDI4\|B9RDI4_RICCO	0	Phospholipase d beta, putative {ECO:0000313\|EMBL:EEF50442.1}
TAIR10	AT2G42010.1	0	phospholipase D beta 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57544280	57553459	+
GWHAAZE00000009	mRNA	57544280	57553459	+
GWHAAZE00000009	exon	57544280	57546016	+
GWHAAZE00000009	exon	57548074	57548268	+
GWHAAZE00000009	exon	57548968	57549216	+
GWHAAZE00000009	exon	57549715	57549783	+
GWHAAZE00000009	exon	57549895	57550042	+
GWHAAZE00000009	exon	57550400	57550548	+
GWHAAZE00000009	exon	57550862	57551038	+
GWHAAZE00000009	exon	57551804	57552001	+
GWHAAZE00000009	exon	57553166	57553459	+
GWHAAZE00000009	CDS	57544280	57546016	+
GWHAAZE00000009	CDS	57548074	57548268	+
GWHAAZE00000009	CDS	57548968	57549216	+
GWHAAZE00000009	CDS	57549715	57549783	+
GWHAAZE00000009	CDS	57549895	57550042	+
GWHAAZE00000009	CDS	57550400	57550548	+
GWHAAZE00000009	CDS	57550862	57551038	+
GWHAAZE00000009	CDS	57551804	57552001	+
GWHAAZE00000009	CDS	57553166	57553459	+

Transcript Sequence
>GWHTAAZE031378 ATGGAGAACTACAATTCTTCATCACCATACCCTTACAATACTTCTTATGGCTACCCTCCAAATTCTGGTCCATACCCACCTCCTACGAATCATCCCTACCCACCCCCAAATTCAACTCCATATCCACCTCCTCAATATGCTCCTTATCCCACCATAGACTACACCAATCCACATTCTGGCTATTCCTATAACCACAGACCCTCTTATTCTGGCCCCATAGATTACAATCCTTCATATCCATATCCCTCTCGCCCAACTCATAGACCCTCGTATTCGGGTCCAATTGACTTCCAGTACCCTCCACCGTCCCCTGGATACACTTATCCCCACCATGGATATGCTTATCCCCCACCCAACCAATCCTCTCCTCAGCATACTATTCAACACCAGAATAGTTTTCAATATGGGTCATCTCAGCCTCATTATCATTATCAGCATTCTCCTCCACCACCCCATTCTGAAAGCCACTCCAGTGCTCCACCGTCTCGGTACAATAGCTTTGATAGCCACCAACCTCACCACCATCACCAACATAGCTCCTCGTCTGTCAGTATGGGTTCAACCACAATACATGATAATGCTAGTGATAGTAGTTCCCAAACCTACCCATCAGTTTACCCGCCCCTTGATGATCTTGTAAGTAATATGCACTTGTCCGAAACACACCACTCCGCCCCTGCATCTCCCCCTGCCCCTGCAGCACCAATGGGGCCAAGTTTCCCTTCGAAATATCAGAGTATAAGTGCAAAATATGATGCCGATTTACATGGCTATTCAAATAGCTCGTTTTCAAGTCAGAGTGAGTCATCTGCTCATCATTCTTTTACACATTCAACTTCGTTTGCCGAATCGAATAAAGGTTTGCAAATTGTGCCCTTTTCGACTTCTAAGGGATCCTTGAAGGTTTTGCTCTTACATGGGAACTTAGACATCTGGGTATATGAGGCGAAAAACCTTCCAAACATGGACATGTTCCATAAAACTTTAGGGGATGTGATTAAATTACCAGGGAAGGTGGGTAAGATCACTAGTGATCCGTACGTCTCGATTTCGGTTAGAGGTGCTGTAATTGGAAGGACTTACGTCATTAGCAACTCTGAAAATCCGATTTGGATGCAACACTTTTCAGTCCCAGTTGCACATTATGATGCCGAAGTGCACTTCTATGTTAAGGACAGTGATATTTTGGGGTCCCAACTTATAGGAACCGTTGCCCTTCCGGTGGAACAGATATACTCCGGAGGTAAACTAGAGGGGTTCTTTCCAATCATCAATGCGAGTGGGAAACCATGCAAGCCTGGAGCTGTGTTGAGTCTGTCGATTCAGTACACCCCAATCGAGAGCTTGAGCATTTATCATCACGGAGTGGGGACCGGTCCGCATTATGGGGTACCCTCCACTTATTTTCCACTTAGGAAAGGCGGGACGGTTACACTTTATCAAGATGCCCATGTACCAGATGGGGCCCTACCGAATTTCTTGCTTGACAATGGTACACAATACGTGCATGGAAAGTGTTGGCGTGATATATTTGACGCAGTTCGTCAGGCCCGGCGTTTGGTTTATATTACGGGGTGGTCAGTGTGGCACAAAGTTAGGCTGATTAGGGATGCTAACATTAATACGACGGATTGTACTCTAGGAGATCTTCTCAAGTCCAAATCACAGGAAGGTGTGAGGGTGCTTCTGCTTGTATGGGATGACCCCACTTCAAGAAACATCATGGGCTACAAAACGGAAGTTGGAACAATTTATACGCACCATCAGAAAACTGTGATTGTGGATGCTGATGCTGGCAATGGTAGAAGGAGAATTGTAGCTTTTGTTGGGGGACTTGATTTATGCGATGGACGATATGATACTCCTGAACATCCCATATTTAGGACACTACAAACAGTGCATGTGGATGATTTCCATAATCCTACTTTCGCGGGGAACCTAGCTGGTTGTCCAAGAGAACCATGGCATGATTTGCACAGTAAGATAGATGGTCCTGCAGCATATGATGTTCTCACGAACTTCGAGGAGCGCTGGTTAAAAGCGTCAAAACCCCAAGGCATTAAAAAACTTAAGATTTCGGATGATGATGCTTTGCTTAGAATAGAGAGGGTTCCTGAAATACTTGGGGTGGCTGATGCTCCTTGTCTTAGCGAGGATGATCCCGAGGGTTGGCATGTCCAGGTTTTTCGTTCGATTGATTCGAGTTCCGTTAAAGGCTTTCCAAAGGATCCAAAAGAAGCCACAAACAAGAACCTGGTATGTGGGAAGAATGTACTCATTGATATGAGCATACATACGGCATACGTAAAAGCCATTCGTGCTGCACAGCATTTCATTTATATCGAGAATCAGTACTTCATCGGGTCCTCTTATAATTGGAGTACATACAAAGATTTAGGTGCTAACAATTTGATTCCAATGGAAATTGCACTGAAAATTGCTGAGAAAATTAGATCACACCAGAGGTTTGCAGCATATATTGTTATCCCAATGTGGCCAGAGGGCAATCCAACAGGTGCTGCCACTCAGAGGATTTTATTTTGGCAGCATAAAACGATGCAAATGATGTACGAGACAATATATAAGGCGTTGGTAGAGGTTGGACTTGAGGATGCTTTCTCACCACAAGATTATTTGAACTTTTATTGCCTTGGGAACCGTGAGGCTGTCAACCCAAATGAACCTCCAAATACTGAGGCACCTGGTACAGCAAACACTCCTCAGGCACAAAGTCGAAAGAGCCGAAGATTCATGATATACGTACACTCAAAAGGGATGATAGTGGATGATGAGTATGTAATAATAGGGTCCGCAAACATAAATCAACGGTCGATGGAGGGCACTAGAGACACGGAGATCGCCATGGGAGCCTACCAACCTAATTATACCTGGGCAAGACAACAAAGAAACCCCCGCGGACAGATATATGGATACAGAATGTCTTTGTGGGCAGAGCACCTCGGACGTATGGACGACTGCTTCACAGAACCAGAGTCCTTGGAATGTGTGAGACGCGTTAGGTCAATGGGGGAGGTGCACTGGAACCAATTCGAGGGCACTGATATAACCGAAATGAAGGGCCACCTTCTGAAGTATCCTGTTGAAGTTGATCGTAAAGGCAAGGTGAGGTCACTTCCTGGATGTGAAAGTTTCCCGGACGTAGGAGGGCAGATAGTTGGATCTTTCCTAGGGATTCAGGAGAATCTAACCATCTAA

Network for GWHGAAZE031344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	307	423	1.50E-26
PF00614.23	PLDc	584	618	1.50E-10
PF00614.23	PLDc	918	944	1.20E-07
PF12357.9	PLD_C	991	1061	3.30E-29

Protein Sequence

>GWHPAAZE031362
MENYNSSSPYPYNTSYGYPPNSGPYPPPTNHPYPPPNSTPYPPPQYAPYPTIDYTNPHSGYSYNHRPSYSGPIDYNPSYPYPSRPTHRPSYSGPIDFQYPPPSPGYTYPHHGYAYPPPNQSSPQHTIQHQNSFQYGSSQPHYHYQHSPPPPHSESHSSAPPSRYNSFDSHQPHHHHQHSSSSVSMGSTTIHDNASDSSSQTYPSVYPPLDDLVSNMHLSETHHSAPASPPAPAAPMGPSFPSKYQSISAKYDADLHGYSNSSFSSQSESSAHHSFTHSTSFAESNKGLQIVPFSTSKGSLKVLLLHGNLDIWVYEAKNLPNMDMFHKTLGDVIKLPGKVGKITSDPYVSISVRGAVIGRTYVISNSENPIWMQHFSVPVAHYDAEVHFYVKDSDILGSQLIGTVALPVEQIYSGGKLEGFFPIINASGKPCKPGAVLSLSIQYTPIESLSIYHHGVGTGPHYGVPSTYFPLRKGGTVTLYQDAHVPDGALPNFLLDNGTQYVHGKCWRDIFDAVRQARRLVYITGWSVWHKVRLIRDANINTTDCTLGDLLKSKSQEGVRVLLLVWDDPTSRNIMGYKTEVGTIYTHHQKTVIVDADAGNGRRRIVAFVGGLDLCDGRYDTPEHPIFRTLQTVHVDDFHNPTFAGNLAGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPQGIKKLKISDDDALLRIERVPEILGVADAPCLSEDDPEGWHVQVFRSIDSSSVKGFPKDPKEATNKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNWSTYKDLGANNLIPMEIALKIAEKIRSHQRFAAYIVIPMWPEGNPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEDAFSPQDYLNFYCLGNREAVNPNEPPNTEAPGTANTPQAQSRKSRRFMIYVHSKGMIVDDEYVIIGSANINQRSMEGTRDTEIAMGAYQPNYTWARQQRNPRGQIYGYRMSLWAEHLGRMDDCFTEPESLECVRRVRSMGEVHWNQFEGTDITEMKGHLLKYPVEVDRKGKVRSLPGCESFPDVGGQIVGSFLGIQENLTI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.821
	SRR3591706	second leaf	10.977
	SRR3591707	mature leaf	9.235
	SRR3591708	Shoot apex	21.672
	SRR3591709	Stem	35.012
	SRR3591710	White floral bud	37.805
	SRR3591711	White flower	36.157
	SRR3591712	Green floral bud	28.346
	SRR3591713	Yellow flower	40.552
SRP173429	SRR8316895	Juvenile bud stage	20.252
	SRR8316896	Juvenile bud stage	33.968
	SRR8316897	Juvenile bud stage	20.533
	SRR8316894	Third green stage	11.587
	SRR8316900	Third green stage	28.583
	SRR8316901	Third green stage	30.149
	SRR8316898	Complete white stage	9.877
	SRR8316899	Complete white stage	26.731
	SRR8316903	Complete white stage	31.850
	SRR8316902	Silver flowering stage	22.676
	SRR8316904	Silver flowering stage	33.759
	SRR8316905	Silver flowering stage	16.198
	SRR8316906	Gold flowering stage	57.683
	SRR8316907	Gold flowering stage	54.435
	SRR8316908	Gold flowering stage	55.712
SRP132670	SRR6706286	Control	36.901
	SRR6706287	Light intensity 50%	36.536
	SRR6706288	Light intensity 20%	34.044
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.310
	CNS0095593	Slightly white alabastrum(diploid) 2	22.212
	CNS0095594	Slightly white alabastrum(diploid) 3	25.106
	CNS0095595	Whole white alabastrum(diploid) 2	23.755
	CNS0095596	Whole white alabastrum(diploid) 3	19.732
	CNS0095597	Whole white alabastrum(diploid) 4	23.686
	CNS0095598	Silvery flower (diploied) 1	25.669
	CNS0095599	Silvery flower (diploied) 2	21.506
	CNS0095600	Silvery flower (diploied) 3	54.084
	CNS0095601	Golden flower (diploid) 1	28.276
	CNS0095602	Golden flower (diploid) 2	58.831
	CNS0095603	Golden flower (diploid) 3	57.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.570
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.684
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.539
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.428
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.587
	CNS0095610	Silvery flower (tetraploid) 1	48.908
	CNS0095611	Silvery flower (tetraploid) 2	47.879
	CNS0095612	Silvery flower (tetraploid) 3	74.360
	CNS0095613	Golden flower (tetraploid) 1	45.063
	CNS0095614	Golden flower (tetraploid) 2	51.849
	CNS0095615	Golden flower (tetraploid) 3	79.137
CRA001975	CRR073297	Stem 1	29.849
	CRR073298	Stem 2	27.872
	CRR073299	Stem 3	19.193
	CRR073300	Leaf 1	36.000
	CRR073301	Leaf 2	32.130
	CRR073302	Leaf 3	18.314
	CRR073303	Juvenile bud 1	23.937
	CRR073304	Juvenile bud 2	18.373
	CRR073305	Juvenile bud 3	32.937
	CRR073306	Third green 1	28.756
	CRR073307	Third green 2	21.211
	CRR073308	Third green 3	30.785
	CRR073309	Second white 1	25.986
	CRR073310	Second white 2	44.226
	CRR073311	Second white 3	57.399
	CRR073312	Silver flowering 1	57.228
	CRR073313	Silver flowering 2	52.292
	CRR073314	Silver flowering 3	54.951
	CRR073315	Gold flowering 1	10.522
	CRR073316	Gold flowering 2	18.821
	CRR073317	Gold flowering 3	10.315
	CRR073318	Tawny withering 1	26.036
	CRR073319	Tawny withering 2	25.859
	CRR073320	Tawny withering 3	25.451