Gene detail

Detail information of GWHGAAZE031336

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17807.1	0	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	2E-18	hypothetical protein Aasi_1443
Swissprot	tr\|O64639\|Y2559_ARATH	0	Receptor-like serine/threonine-protein kinase At2g45590
trEMBL	tr\|A0A068VB52\|A0A068VB52_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_180 {ECO:0000313\|EMBL:CDP17807.1}
TAIR10	AT2G45590.1	9E-164	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57347520	57349550	+
GWHAAZE00000009	mRNA	57347520	57349550	+
GWHAAZE00000009	exon	57347520	57349550	+
GWHAAZE00000009	CDS	57347520	57349550	+

Transcript Sequence
>GWHTAAZE031370 ATGCCCTCACCACCACCGCCATTCCCAGATTTCCCGGCTAATTCACCACCGCCGGCGCCACCCAACCTCCACCACCACCACTCCCCCTTCCTCCCCCCGCTCCTCGCGGGAACCCTAGCCCTCGCATTCCTGGCCTTCTTCGCCGTCCTTTACCGGAAACTATCCGGAAAGCGCACCGCTCCGGCGGATCTCACCAAACCTCCGCACCGCTTCTCCTACTCCTACCTCCGCCGCGCTACGTCATCCTTCGCCGCCTGCAACCGCCTCGGTCAGGGAGGATTCGGTTCGGTGTACAGAGGAACACTTGATTCCGGCCAGGATATCGCCGTGAAGGTAATGGATTCTTCTGGATCTCTCCAAGGCGAGCGAGAGTTCCACAACGAACTCTCAATCGCCTCCAGGATCGAGGCAATGTCCGGACAGTGTCCGCACATTGTGTCGATTCTCGGATTCTCCTCCGATCAACGGAACCGGTGCCGGAGGAGACTGTCACTAGTGTATGAGTACATGCAAAACGGTAGCCTACAGGATGCATTGCTTCACCGCAAGTGTTTAGAGCTATTGGATTGGAAAATGAGATTTAGGATTATAGTTGCTATAGCTAAAGGAATTGAATATCTTCATTGTTCATGTGATCCGCCTATAGTTCACGGGGATATTAAACCGTCTAATATACTGTTGGATTCTAATTTTAATGCGAAAATAGCGGATTTTGGTTTAGCAAAGGTTTTAGCTCCAGATGGCATTGACGAGACATTTATTGAGTGTGGAGAGGATGTGGAGACAATTGATAAGGGAAAAAGGAGGGATGGTAATGGTGAAGATAATGGATCCATACTAGAGGAGACAGAGAGTGCGAGTGTGATGACAGAGGAGGTAGTTGTGAATGTAGATCAATCGCCGGAGAGCTGTGTTAGGGTCTTTGATAGGGAGGTGGCAGTCTCGCCGGAGATGGGGTCTGTTGGATTGGAGGCCACGCCGTCGAGTGTGTCAGAGAGTTGTTTCGATAGGTTGAGTGTTGATAGTGGTACTAACAACAGGAGGGTTGTTGTGAGGAATAAGAGTGGCTCTGGAAGGGATTGGTGGTGGAAGCAAGATAATGCTGGTGAAGGGTCGGAATCCGGCAGGGTAAAAGATTATGTAATGGAGTGGATTGGGAATGAGATAAAGAAAGAGAGACCGAAGAAGGATTGGGTTGCAGAGAGCACAAAGATGGAGCAAAAGAAGAATAGTAACAAGACATTGGAGTGGTGGGCATCATTGGATGAGGAAAAGATTCAAAAGGAGAGGAAAAAGAATCGGAAGCCGAGGGAATGGTGGAAGGAAGAGTTTTGCGATGAATTGACAAAGAAAAAGAAGAACAAGAAGAAGAAGAAAAGGGGACTAAGTCTTGGATCAGGCTGCGGTGGAGAAATGTGGTGGCAAAGGGATGAGGAATTGGGGCAAGAGAGCAAAAAGAGGAAGAGCAGGGGTAGTAGGGGCAGCATTGATTGGTGGTTAGATGGTTTCAGTGGTGAATTTCGAAGTGCTCGAAGAAATAGCCAAGATTGGGCTGGTGGAGAAATCCCCAAAAGTGGTGGTATTAGTAGTACTCCTAGCATGAGAGGAACTGTTTGCTATATAGCTCCAGAGTATGGTGGCGGTGGGTTGCTGTCAGAGAAGTGCGATGTTTATAGCTTTGGTGTACTCTTGCTGGTTTTGGTATCGGGTCGAAGGCCATTACAAGTAACGGCCTCACCAATGTCTGAATTCGAAAGGGCAAATCTCATTTCATGGGCTAGGCAGCTTGCTCAAAATGGGAGGCTCTTGGATCTTGTTGATACTAATATCCAGTCTTTGAATAAGGAAAAAGTACTATTGTGCATCAAAATTGCACTTCTTTGTTTACAAAGATCACCTAGAAAGCGCCCCACCATGAAAGAAATTGTGGAGATGCTCTCTGGTGAGGCCGAGGCGCCTCACTTGCCGTTTGAGTTTTCGCCATCACCGCCATCCAATTTCCCTTTCAAGTCCCGGAAAAAGGCCCGATGA

Network for GWHGAAZE031336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	87	247	3.90E-29
PF00069.26	Pkinase	531	644	1.60E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.409
	SRR3591706	second leaf	15.126
	SRR3591707	mature leaf	7.579
	SRR3591708	Shoot apex	18.904
	SRR3591709	Stem	5.598
	SRR3591710	White floral bud	6.540
	SRR3591711	White flower	3.194
	SRR3591712	Green floral bud	16.793
	SRR3591713	Yellow flower	0.186
SRP173429	SRR8316895	Juvenile bud stage	5.903
	SRR8316896	Juvenile bud stage	6.555
	SRR8316897	Juvenile bud stage	3.505
	SRR8316894	Third green stage	5.908
	SRR8316900	Third green stage	10.456
	SRR8316901	Third green stage	9.458
	SRR8316898	Complete white stage	2.149
	SRR8316899	Complete white stage	15.554
	SRR8316903	Complete white stage	5.229
	SRR8316902	Silver flowering stage	0.329
	SRR8316904	Silver flowering stage	0.835
	SRR8316905	Silver flowering stage	0.314
	SRR8316906	Gold flowering stage	0.291
	SRR8316907	Gold flowering stage	0.321
	SRR8316908	Gold flowering stage	0.455
SRP132670	SRR6706286	Control	13.481
	SRR6706287	Light intensity 50%	15.079
	SRR6706288	Light intensity 20%	14.823
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.158
	CNS0095593	Slightly white alabastrum(diploid) 2	11.978
	CNS0095594	Slightly white alabastrum(diploid) 3	11.638
	CNS0095595	Whole white alabastrum(diploid) 2	8.109
	CNS0095596	Whole white alabastrum(diploid) 3	6.510
	CNS0095597	Whole white alabastrum(diploid) 4	6.814
	CNS0095598	Silvery flower (diploied) 1	9.377
	CNS0095599	Silvery flower (diploied) 2	5.556
	CNS0095600	Silvery flower (diploied) 3	2.637
	CNS0095601	Golden flower (diploid) 1	8.246
	CNS0095602	Golden flower (diploid) 2	4.590
	CNS0095603	Golden flower (diploid) 3	4.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.547
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.883
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.073
	CNS0095610	Silvery flower (tetraploid) 1	1.019
	CNS0095611	Silvery flower (tetraploid) 2	2.074
	CNS0095612	Silvery flower (tetraploid) 3	0.882
	CNS0095613	Golden flower (tetraploid) 1	0.189
	CNS0095614	Golden flower (tetraploid) 2	1.449
	CNS0095615	Golden flower (tetraploid) 3	0.348
CRA001975	CRR073297	Stem 1	24.611
	CRR073298	Stem 2	30.391
	CRR073299	Stem 3	28.568
	CRR073300	Leaf 1	27.519
	CRR073301	Leaf 2	26.578
	CRR073302	Leaf 3	18.717
	CRR073303	Juvenile bud 1	22.265
	CRR073304	Juvenile bud 2	24.089
	CRR073305	Juvenile bud 3	35.252
	CRR073306	Third green 1	1.287
	CRR073307	Third green 2	2.250
	CRR073308	Third green 3	2.785
	CRR073309	Second white 1	0.128
	CRR073310	Second white 2	0.076
	CRR073311	Second white 3	0.161
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.088
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.509
	CRR073316	Gold flowering 2	8.590
	CRR073317	Gold flowering 3	5.893
	CRR073318	Tawny withering 1	8.071
	CRR073319	Tawny withering 2	7.668
	CRR073320	Tawny withering 3	7.086