Gene detail

Detail information of GWHGAAZE031322

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279696.1	0	PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Vitis vinifera]
COG	YP_007567780.1	5E-31	RalF protein, translocated into host cells by the Dot/Icm system
Swissprot	tr\|Q9LZX8\|BIG2_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 2
trEMBL	tr\|F6I376\|F6I376_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61393.1}
TAIR10	AT3G60860.1	0	SEC7-like guanine nucleotide exchange family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57121889	57136391	+
GWHAAZE00000009	mRNA	57121889	57136391	+
GWHAAZE00000009	exon	57121889	57123072	+
GWHAAZE00000009	exon	57126985	57127200	+
GWHAAZE00000009	exon	57127408	57127753	+
GWHAAZE00000009	exon	57127976	57128398	+
GWHAAZE00000009	exon	57128474	57128760	+
GWHAAZE00000009	exon	57129249	57129555	+
GWHAAZE00000009	exon	57130631	57131118	+
GWHAAZE00000009	exon	57131693	57132014	+
GWHAAZE00000009	exon	57132430	57132808	+
GWHAAZE00000009	exon	57134556	57135229	+
GWHAAZE00000009	exon	57135784	57135936	+
GWHAAZE00000009	exon	57136026	57136391	+
GWHAAZE00000009	CDS	57121889	57123072	+
GWHAAZE00000009	CDS	57126985	57127200	+
GWHAAZE00000009	CDS	57127408	57127753	+
GWHAAZE00000009	CDS	57127976	57128398	+
GWHAAZE00000009	CDS	57128474	57128760	+
GWHAAZE00000009	CDS	57129249	57129555	+
GWHAAZE00000009	CDS	57130631	57131118	+
GWHAAZE00000009	CDS	57131693	57132014	+
GWHAAZE00000009	CDS	57132430	57132808	+
GWHAAZE00000009	CDS	57134556	57135229	+
GWHAAZE00000009	CDS	57135784	57135936	+
GWHAAZE00000009	CDS	57136026	57136391	+

Transcript Sequence
>GWHTAAZE031356 ATGGCTTCTTCGGAAGCCGATTTCGGCCTCTACCAACTCCTAACACCGCCCCTAGAAAAAATAATAAAGACCGGATCCTCCTGGCGCAAAAACTCCAAACTCATCCACCAATGCAAATCCCTCCTCGAACGCATCAATTCCCCCAACAAACCACCACTCTCTCCTCCCTCCCCTAACCAATCACATTCCGACACCTCGCCACCTCTCCCAGGATTCATCTCCGAATTCTCCCTATCCGACTCTGAGTTCCTCCTCTCCCCCTTCATAAATGCTTGCACCTCCGGCACTACAAAGATAGCAGATCCCGCACTCGATTGTATACAGAAACTCATCGCACACGGTTTACTTAAAGGCCAAGCTGATTCAATTGGAGGTACGGAGTCGAATTTGCTCTCCAGATTGATTGAGTCTGTGTGTAAATGTCATGATTTAGGCGACGGGGTGGTGGAATTGTTGGTGATTAAGACGATTTTATCCGCGGTGACTTCGGTTTATTTGAGAATACACGGAGATTGCTTGTTGTTGATTGTGAGGACTTGTTATGATATTTATTTAGGGAGTAAGAATGTGGTGAATCAAACTACGGCGAAAGCGTCATTGATACAAATGCTGGTGATTATTTTTAGGAGAATGGAGGCGGATTCGTCTACTGTGCCGGTGCAGCCTATTGTGGTGGCGGAGTTAATGGAGGCACCGGAGAAAGCTGATGCTGATGGTGCAATGACTGTGTTTGTTCAAGGCTTTATTACGAAGATTATGCAGGATGTTGATGGAGTTTTGCACGTAGGTACACCGAGGAGTGGATTGGTTCGTGATGGGGCGTTTGAGACGAATACATCGACGGTGGAGTCCACGAATCCAGCGGATTTGTTGGATTCGACTGATAAGGATATGTTGGATGCCAAGTATTGGGAGGTTATTATGTATAAGACGGCGTTAGCGGGGAGAAAAGGGGAATTGGCTGATGGAGAGACGGAGAGGGATGATGATTTGGAGGTTCAGATTGGGAACAAGTTGAGGAGAGATGCGTTTTTGGTTTTTAGGGCGCTTTGTAAGCTCTCGATGAAAACACCTCCCAAGGAGGCTTTGGTGGAACCGAATTTGATGAGGGGGAAGATTGTTGCATTGGAGTTGCTTAAGATTTTGTTGGAGAATGCTGGAGCAATATTTAGCACTAGTGAAAGTCTGGTGTCAAGATTTAGAGCTGGACTGAAGGCAGAGATTGGAGTATTTTTCCCCATGATTGTTCTGAGAGTTTTAGAAAATGTTGGTCAACCTAATTTCCAGCAGAAAATGATTGTGCTTCGGTTCCTCAAGAAGCTATATGTGGATTCACAGATATTGGTAGATATATTCATAAACTATGATTGCGATGTCAATTCAACAAATATATTTGAGAGAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCACCTAGTGCTGCCACTACACTGTTGCCATCTCAAGATGTGACCATGAAACTCGAAGCAATGAAGTGCTTAGTGGCAATATTGAAATCGATGGGAGATTGGATGAATAAGCAATTGTGTATTCCAGATCCTAATTCATTGAAGAAATTTGAGGAAGTTGAAACTGAATCTGAACCTGGAAATTTTCCCATGGAAAATGGGAATGAGGATGAGCCTGTTGAAGGATCGGATACTCAATCCGAAGCCTCCAGTGAAGTTTCCGATGTTTTGTCTATTGAACAGCGCCTCTCTTACAAGCTTGAACTTCAGGAAGGTATATCTCTTTTCAACCGAAAAGCTAAAAGGGGAATTGAATTCCTTATCAATGCGAATAAAGTTGGGGATTCGCCAGAAGAGATAGCAGCTTTCCTTAAAAGCGCGTCTGGTTTGAACAAGACTATGGTTGGTGATTATCTGGGAGAAAGAGAAGATTTATCACTCAAAGTAATGCATGCGTATGTGGATTCCTTTGACTTTCAAGGAATGGAATTTGACGAGGCAATCAGAGCCTTTCTACAGGGCTTTAGATTGCCCGGTGAGGCACAGAAGATTGATCGTATAATGGAAAAGTTTGCCGAATGTTACTGCAAATGCAATCCAAACGCTTTCACCAGTGCGGACACGGCCTATGTACTTGCTTACTCTGTTATAATGCTCAATACGGATGCTCATAACCCTATGGTTAAGAGTAAGATGTCAGCGGATGATTTTATAAGAAACAATCGTGGCATAGATGATGGAAATGATTTACCTGAGGAGTACTTGAGATCATTGTTTGAACGGATATATGGAAATGAGATTAAGATGAAAGAACATGATTTTGTTCCTCAGCAGAAGCAGTCTTTCAACCCAAACAGAATTTTAGGGTTAGACAGTATATTAAATATTGTGAGCCGCAAGCGGGAGGAAGAAAATCATACCACTGACGATGTTATCCGACATATGCAAGAACAATTCAAAGAAAAAGCTTGCAAATCCGAGCCAGTTTATTATGCAGCAATGGATGTGGTGATCCTCAGATTCATGATCGAAGTATGCTGGGCTCCTATGTTGGCTGCCTTCAGTGTTCCTATTGACCAAAGTGATGATGAAATAGTAATAGCCCTATGTTTGGAAGGATTTCGTTATGCGATCCATGTTACCGCTGTAATGTCCATGAAGACACATAAAGATGCGTTTGTGACATCGTTAGCCAAGTTTACTTCTCTCCACTCGCCTGCAGATATTAAACAGAAGAACATAGATGCCATCAAGGTTGGTTATTACCTTCTCTTCACCATTGCGATGGCGGTAGTTATAATTGCAGATGAAGATGGGAATTACTTACAGGAGGCCTGGGAGCATATTTTGCTGTGTGTTTCTCGGTTTGAGCATTTGCATCTCTTGAGTGAGGGAGCCCCACCGGACGCCACTTTCTTTTCAATTAATCAGAATAACTTTGAGAAATCAAAACAAACCAAGTCAAGTATATTGCCCGTTTTAAAAAAGAAGAGTCAATATGCAACTGCTGCATTGAGAAGAGGTTCATATGATAGTGCCGGTGTTGGTGGCAATGCTTCTAAATGGGTTCCACCTGAAAAAATTAACAACTTCTTCTCTAACCTAAATATGTTGGAACAAGTCGGTGAGATGAATCTTATATTCACAAAGAGTCAAAAATTAAACAGTGAGGCGATTGTTGACTTTGTCAGAGCTCTCTGCAAGGTCTCCGTTGAAGAATTGTGTTCTCCGTCTGATCCTAGGGTTTTCAGCCTTACGAAAATAGTCGAGATCGCGCACTACAATATGAACCGTATCAGGCTTGTTTGGTCAAGCATTTGGAATATACTCTCTGATTTCTTTGTGACGATTGGCTGTTCTGGTAACCTTTCAATTGCAATTTTTGCAATGGATTCTTTACGCCAGTTATCGATGAAATTTTTGGACCGGGAAGAGTTGGCTAACTACAACTTTCAGAATGAGTTTATGAAGCCTTTTGTTATTGTTATGCGCAAGAGTGGTGCTGTTGAAATCAGGGAATTAATCATCAGATGTGTTTCTCAAATGGTTTTATCACGTGTTAATAACGTCAAGTCAGGATGGAAAAGCATGTTCATGGTATTTACAACGGCGGCTTATGATGACCACAAAAACATTGTACTTTTGGCATTTGAAATAATCGAGAAGATTATACGGGATTATTTCCTGTATATTACTGAAACGGAAACCACCACTTTTACAGATTGTGTAAATTGTCTGATCGCATTCACTAATAGTAGATTCAACAAAGATATTAGTCTAAATGCTATTGCTTTTCTTAGATTTTGTGCAACCAAACTTGCTGAAGGAGATCTAAGCTCCTCCTCAAAGAACAAGAAGGAAAATTCTGAAAAGATTTCTCCGTCATTACCTCTGAATGGAAAAGATAGAAAATACGAAAATGGAGAGTTGACAGATAAGGGAGATCATCTATATTTCTGGTTCCCATTGTTGGCCGGTTTATCTGAACTTAGCTTTGACCCAAGGCCCGAAATCAGAAAGAGTGCCCTACAAGTACTCTTCGATACATTACACAACCATGGTCATCATTTCTCTCTACCACTGTGGGAAAGGGTGTTTGAATCGGCACTATTTCCAATCTTTGACTATGTTCGCCATGCAATTGACCCATCTGGCGAAATTTCACCTGGGCCCACTGATGGTGAGCACGATCAAGATACATGGCTTTATGAGACATGCACAATGGCACTCCAACTAGTTGCAGATATTTTCGTTAAATTTTACAACACGGTGAACCCACTTTTAGAGAAAGTGATGCTGTTATTAGTAAGTTTTATTAAGAGGCCCCACCAAAACCTTGCTGGTATTGGGATTGCTGCATTTGTCCGTTTGATGAGCAATGCAGGGAATCTTTTCTCTGATGATAACTGGCTAGAAGTGGTTTTGTCGCTACAAGAAGCGGCTAATGCTACACTCCCAGATTTCTCTTTTGTTATTGAAGACAGTATGTTTTGGAGCCATGATTATGATATAATTAGACGTACTAGTAATGTAGAATCTGGTGGGACCGGTATGGCCGATGTAGATGCAGGAAATCTCAGGAAACACATTCTGTATGCTGCTATTTCCGATGCCAAGTGTCGAGCTGCTGTTCAACTATTACTGATTCAGGCAGTGATGGACATTTATATAATGTACAGACCTCAACTATCAGCCAAAAACACTGTAATCCTCTATGACGCCGTACACACCGTGGCATTTCATACTCACAGGATTAATGCGGACCCCACACTACGATCTAAGCTACAAGAGCTGGGGCCCATGCCTCCAACTTGCGAGGAATCCTTAGTAGAGTCTTACCTGGTTGACCTTTGCGAAGAAGTCCTATTGCTCTACATAGACTCCGGACAGATGATTCCGGAATCATCTCCCGGTGGACCCCACAACTGGTCGTCTATTCCTTTAGGGTCCGGTAAACGAAGAGAATTGGCTGCACGGGCCCCCCTTATTGTTGCAACCCTACAGGCTATTTGTAGTTTAGGAGATTCTTTGCTTGAGAAGAACATGGCTTGCTTCTTACCGTTACTTTCAAGTTTGATAAGCTGTGAGCAAGGCTCAAATGAGGTTCAGCTAGCCCTTAGTGAAATGCTTAGCTTGACAGTGGGTCCCTTATTGCTTCGGTCGTGTTGA

Network for GWHGAAZE031322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16213.6	DCB	10	214	1.10E-36
PF12783.8	Sec7_N	340	398	6.20E-08
PF12783.8	Sec7_N	396	464	3.30E-16
PF01369.21	Sec7	578	759	1.20E-72
PF09324.11	DUF1981	1131	1213	4.00E-29
PF16206.6	Mon2_C	1311	1372	7.80E-10

Protein Sequence

>GWHPAAZE031340
MASSEADFGLYQLLTPPLEKIIKTGSSWRKNSKLIHQCKSLLERINSPNKPPLSPPSPNQSHSDTSPPLPGFISEFSLSDSEFLLSPFINACTSGTTKIADPALDCIQKLIAHGLLKGQADSIGGTESNLLSRLIESVCKCHDLGDGVVELLVIKTILSAVTSVYLRIHGDCLLLIVRTCYDIYLGSKNVVNQTTAKASLIQMLVIIFRRMEADSSTVPVQPIVVAELMEAPEKADADGAMTVFVQGFITKIMQDVDGVLHVGTPRSGLVRDGAFETNTSTVESTNPADLLDSTDKDMLDAKYWEVIMYKTALAGRKGELADGETERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALVEPNLMRGKIVALELLKILLENAGAIFSTSESLVSRFRAGLKAEIGVFFPMIVLRVLENVGQPNFQQKMIVLRFLKKLYVDSQILVDIFINYDCDVNSTNIFERMVNGLLKTAQGVPPSAATTLLPSQDVTMKLEAMKCLVAILKSMGDWMNKQLCIPDPNSLKKFEEVETESEPGNFPMENGNEDEPVEGSDTQSEASSEVSDVLSIEQRLSYKLELQEGISLFNRKAKRGIEFLINANKVGDSPEEIAAFLKSASGLNKTMVGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAECYCKCNPNAFTSADTAYVLAYSVIMLNTDAHNPMVKSKMSADDFIRNNRGIDDGNDLPEEYLRSLFERIYGNEIKMKEHDFVPQQKQSFNPNRILGLDSILNIVSRKREEENHTTDDVIRHMQEQFKEKACKSEPVYYAAMDVVILRFMIEVCWAPMLAAFSVPIDQSDDEIVIALCLEGFRYAIHVTAVMSMKTHKDAFVTSLAKFTSLHSPADIKQKNIDAIKVGYYLLFTIAMAVVIIADEDGNYLQEAWEHILLCVSRFEHLHLLSEGAPPDATFFSINQNNFEKSKQTKSSILPVLKKKSQYATAALRRGSYDSAGVGGNASKWVPPEKINNFFSNLNMLEQVGEMNLIFTKSQKLNSEAIVDFVRALCKVSVEELCSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWNILSDFFVTIGCSGNLSIAIFAMDSLRQLSMKFLDREELANYNFQNEFMKPFVIVMRKSGAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFLYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSSSSKNKKENSEKISPSLPLNGKDRKYENGELTDKGDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLHNHGHHFSLPLWERVFESALFPIFDYVRHAIDPSGEISPGPTDGEHDQDTWLYETCTMALQLVADIFVKFYNTVNPLLEKVMLLLVSFIKRPHQNLAGIGIAAFVRLMSNAGNLFSDDNWLEVVLSLQEAANATLPDFSFVIEDSMFWSHDYDIIRRTSNVESGGTGMADVDAGNLRKHILYAAISDAKCRAAVQLLLIQAVMDIYIMYRPQLSAKNTVILYDAVHTVAFHTHRINADPTLRSKLQELGPMPPTCEESLVESYLVDLCEEVLLLYIDSGQMIPESSPGGPHNWSSIPLGSGKRRELAARAPLIVATLQAICSLGDSLLEKNMACFLPLLSSLISCEQGSNEVQLALSEMLSLTVGPLLLRSC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18442	ARFGEF, BIG	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.809
	SRR3591706	second leaf	0.508
	SRR3591707	mature leaf	0.132
	SRR3591708	Shoot apex	1.244
	SRR3591709	Stem	0.798
	SRR3591710	White floral bud	0.695
	SRR3591711	White flower	0.220
	SRR3591712	Green floral bud	6.501
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.896
	SRR8316896	Juvenile bud stage	5.195
	SRR8316897	Juvenile bud stage	1.809
	SRR8316894	Third green stage	2.061
	SRR8316900	Third green stage	5.625
	SRR8316901	Third green stage	4.831
	SRR8316898	Complete white stage	0.079
	SRR8316899	Complete white stage	1.323
	SRR8316903	Complete white stage	0.280
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.108
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.021
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.782
	SRR6706287	Light intensity 50%	2.674
	SRR6706288	Light intensity 20%	2.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.619
	CNS0095593	Slightly white alabastrum(diploid) 2	2.184
	CNS0095594	Slightly white alabastrum(diploid) 3	3.096
	CNS0095595	Whole white alabastrum(diploid) 2	3.202
	CNS0095596	Whole white alabastrum(diploid) 3	3.995
	CNS0095597	Whole white alabastrum(diploid) 4	3.231
	CNS0095598	Silvery flower (diploied) 1	0.619
	CNS0095599	Silvery flower (diploied) 2	0.717
	CNS0095600	Silvery flower (diploied) 3	0.510
	CNS0095601	Golden flower (diploid) 1	0.499
	CNS0095602	Golden flower (diploid) 2	0.355
	CNS0095603	Golden flower (diploid) 3	0.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.568
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.170
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.533
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.470
	CNS0095610	Silvery flower (tetraploid) 1	0.142
	CNS0095611	Silvery flower (tetraploid) 2	0.230
	CNS0095612	Silvery flower (tetraploid) 3	0.179
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.252
	CNS0095615	Golden flower (tetraploid) 3	0.019
CRA001975	CRR073297	Stem 1	2.053
	CRR073298	Stem 2	1.977
	CRR073299	Stem 3	1.219
	CRR073300	Leaf 1	2.731
	CRR073301	Leaf 2	2.475
	CRR073302	Leaf 3	1.359
	CRR073303	Juvenile bud 1	1.166
	CRR073304	Juvenile bud 2	0.907
	CRR073305	Juvenile bud 3	0.608
	CRR073306	Third green 1	0.033
	CRR073307	Third green 2	0.012
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.029
	CRR073312	Silver flowering 1	0.057
	CRR073313	Silver flowering 2	0.184
	CRR073314	Silver flowering 3	0.099
	CRR073315	Gold flowering 1	0.194
	CRR073316	Gold flowering 2	0.099
	CRR073317	Gold flowering 3	0.033
	CRR073318	Tawny withering 1	0.604
	CRR073319	Tawny withering 2	0.495
	CRR073320	Tawny withering 3	0.812