Detail information of GWHGAAZE031319


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007052037.14.35836E-75LOB domain-containing protein 31 [Theobroma cacao]
Swissprottr|O22132|LBD19_ARATH3E-53LOB domain-containing protein 19
trEMBLtr|A0A061DTV8|A0A061DTV8_THECC2E-75LOB domain-containing protein 31 {ECO:0000313|EMBL:EOX96194.1}
TAIR10AT2G45410.11E-34LOB domain-containing protein 19

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5706284957066168-
GWHAAZE00000009mRNA5706284957066168-
GWHAAZE00000009exon5706284957063160-
GWHAAZE00000009exon5706589657066168-
GWHAAZE00000009CDS5706589657066168-
GWHAAZE00000009CDS5706284957063160-
Transcript Sequence

Network for GWHGAAZE031319

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB23931.30E-24
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.206
SRR3591706second leaf3.486
SRR3591707mature leaf3.092
SRR3591708Shoot apex2.317
SRR3591709Stem0.946
SRR3591710White floral bud2.451
SRR3591711White flower2.918
SRR3591712Green floral bud3.784
SRR3591713Yellow flower0.709
SRP173429 SRR8316895Juvenile bud stage 4.612
SRR8316896Juvenile bud stage 8.778
SRR8316897Juvenile bud stage 1.560
SRR8316894Third green stage 2.000
SRR8316900Third green stage 2.106
SRR8316901Third green stage 3.808
SRR8316898Complete white stage 0.181
SRR8316899Complete white stage 4.594
SRR8316903Complete white stage 0.309
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.263
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.335
SRR8316907Gold flowering stage 0.233
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.084
SRR6706287Light intensity 50%3.543
SRR6706288Light intensity 20%4.044
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.812
CNS0095593Slightly white alabastrum(diploid) 21.107
CNS0095594Slightly white alabastrum(diploid) 37.146
CNS0095595Whole white alabastrum(diploid) 21.246
CNS0095596Whole white alabastrum(diploid) 30.477
CNS0095597Whole white alabastrum(diploid) 40.553
CNS0095598Silvery flower (diploied) 13.530
CNS0095599Silvery flower (diploied) 21.277
CNS0095600Silvery flower (diploied) 30.526
CNS0095601Golden flower (diploid) 11.039
CNS0095602Golden flower (diploid) 22.239
CNS0095603Golden flower (diploid) 31.471
CNS0095604Slightly white alabastrum(tetraploid) 12.064
CNS0095605Slightly white alabastrum(tetraploid) 21.476
CNS0095606Slightly white alabastrum(tetraploid) 33.533
CNS0095607Whole white alabastrum(tetraploid) 11.071
CNS0095608Whole white alabastrum(tetraploid) 21.919
CNS0095609Whole white alabastrum(tetraploid) 31.163
CNS0095610Silvery flower (tetraploid) 10.214
CNS0095611Silvery flower (tetraploid) 21.757
CNS0095612Silvery flower (tetraploid) 32.317
CNS0095613Golden flower (tetraploid) 11.135
CNS0095614Golden flower (tetraploid) 22.452
CNS0095615Golden flower (tetraploid) 31.470
CRA001975CRR073297Stem 112.893
CRR073298Stem 210.757
CRR073299Stem 314.252
CRR073300Leaf 11.121
CRR073301Leaf 21.731
CRR073302Leaf 33.978
CRR073303Juvenile bud 11.237
CRR073304Juvenile bud 23.156
CRR073305Juvenile bud 31.556
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.079
CRR073309Second white 10.000
CRR073310Second white 20.350
CRR073311Second white 30.415
CRR073312Silver flowering 10.283
CRR073313Silver flowering 20.098
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.357
CRR073316Gold flowering 21.306
CRR073317Gold flowering 33.916
CRR073318Tawny withering 10.167
CRR073319Tawny withering 20.841
CRR073320Tawny withering 30.862