Gene detail

Detail information of GWHGAAZE031313

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661636.1	0	PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q75IP6\|KU80_ORYSJ	0	ATP-dependent DNA helicase 2 subunit KU80
trEMBL	tr\|D7U7S3\|D7U7S3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38852.3}
TAIR10	AT1G48050.1	6E-156	Ku80 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	56966579	56971293	-
GWHAAZE00000009	mRNA	56966579	56971293	-
GWHAAZE00000009	exon	56966579	56966737	-
GWHAAZE00000009	exon	56967665	56967871	-
GWHAAZE00000009	exon	56968452	56968647	-
GWHAAZE00000009	exon	56968965	56969251	-
GWHAAZE00000009	exon	56970022	56970443	-
GWHAAZE00000009	exon	56971095	56971226	-
GWHAAZE00000009	exon	56971287	56971293	-
GWHAAZE00000009	CDS	56971287	56971293	-
GWHAAZE00000009	CDS	56971095	56971226	-
GWHAAZE00000009	CDS	56970022	56970443	-
GWHAAZE00000009	CDS	56968965	56969251	-
GWHAAZE00000009	CDS	56968452	56968647	-
GWHAAZE00000009	CDS	56967665	56967871	-
GWHAAZE00000009	CDS	56966579	56966737	-

Transcript Sequence
>GWHTAAZE031347 ATGAAAGGTACAAAGAACGAGCTGAAAAAGGAAGTGGGTGGATATGAACATGTGGTGGTTTTTCGGCATATCAAAGTTGTTGATGGAGATCTTATCAATGCTTTTCAACAACTCCCTCGTGGAACCGTTGATGGCGACTTGGTAGTTCTTGATGCGATCATTGTTGGGATGGATGTGCTGATTAAAAAATTTGGACAAACAAGCAAAGGGAAAAAAGTGAAAAAGCATCTCTGTCTTTTCACAAGCGCAAATTTTCCTATTAGAAATCCTTATGAAGGAACAAAGGAAAATGAAGTCACCACCATTGCTGTGCAGATGGCTTTACGTGGCATGAAGATGGATAGTATAGTTTTCCGGGGGACCAAAGAGAGTTTTGATGCAAATAAGAGAACAATAGAGGAGAATGATCTTCTATTGAGTATATTTTCGAAAAAGACTTCTTCAAAGACTCTGCGTGTCGATAACTCAGTTTCATTATTAGGCGCAGTTAGAACTCGCAGTATATCCCCGGTCACAATATATCGGGGTGATTTTGAACTAAGCTCCAAAATGAAGATCAAGGTGTGGGTCTACAAGAAAACAGCTGAAGAGAGGTTCCCCACTCTGAAGAAATATTCTGATAAAGCACCTCCATCAGATAAATATGCTACTCACGAAATCAAGGTTGATTATGAGTACAAGAGTGTTGAAGATCTTAGTAAAGTTGTGCCCCCAGACCAAAGGGTAAAAGGTTATTGGTATGGACCTCAAGTAGTTCCTCTTTCATCTGATCAATGGGAAACTGCTAAGTTCAAACCCGAGAAGAGTGTGAAACTTTTAGGATTTACAAATGCTTCAAACATAAAGCGATACCATTACATGAAAGATGTCAACTTCTTCGTGGCTGAACCGGGGAATAGAAAAGCAATCCTTTCAGTTTCTGCTTTAGCAAGAGCGATGAAGGAACTAAACAAAGTAGCAATTCTCCGGTGTGTTTGGAGACAAGGACAAGATAAACTTGCCATAGGGGTTTTGACTCCGTATATATCCGACAAGGATAACATCGCAGATTCGTTTTACTTTAATGTACTTCCATTTGCTGAGGACGTTAGGGAGTTTCACTTCCCATCCTTCGGCAGTTTCCCTTCGTCATTGCAGCCTAATGAAGAACAGCAAGAGGCGGCCGATAAATTGGTGAAGGTGCTTGAACTTGCGCCGTCAGGCAGAGAGGAAATATTGCAGCCAGATTTAACACTAAATCCTGTTTTGGAGCGATTTTATCGCCATCTTGAATTGAAATCAAAGAATCCAAACGCGGCTGTGCCACCACTTGATGAAAGTCTCAAGCAGATAACAGAACCTGATCCTCAACTACTTATACGGAACAAGCCTGTGATTGATGAGTTTTGTAGACAATTTCGACTCAAGTAA

Network for GWHGAAZE031313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02735.17	Ku	182	386	1.20E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10885	XRCC5, KU80, G22P2	Non-homologous end-joining	map03450

Gene Ontology

GO term	Ontology	Name
GO:0006303	biological_process	double-strand break repair via nonhomologous end joining
GO:0000723	biological_process	telomere maintenance
GO:0006310	biological_process	DNA recombination
GO:0005634	cellular_component	nucleus
GO:0043564	cellular_component	Ku70:Ku80 complex
GO:0003677	molecular_function	DNA binding
GO:0003684	molecular_function	damaged DNA binding
GO:0042162	molecular_function	telomeric DNA binding
GO:0003678	molecular_function	DNA helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.317
	SRR3591706	second leaf	0.271
	SRR3591707	mature leaf	0.756
	SRR3591708	Shoot apex	2.327
	SRR3591709	Stem	0.799
	SRR3591710	White floral bud	0.352
	SRR3591711	White flower	0.722
	SRR3591712	Green floral bud	1.298
	SRR3591713	Yellow flower	0.174
SRP173429	SRR8316895	Juvenile bud stage	1.099
	SRR8316896	Juvenile bud stage	2.546
	SRR8316897	Juvenile bud stage	0.619
	SRR8316894	Third green stage	1.139
	SRR8316900	Third green stage	1.769
	SRR8316901	Third green stage	1.710
	SRR8316898	Complete white stage	0.284
	SRR8316899	Complete white stage	1.977
	SRR8316903	Complete white stage	0.803
	SRR8316902	Silver flowering stage	0.144
	SRR8316904	Silver flowering stage	0.120
	SRR8316905	Silver flowering stage	0.143
	SRR8316906	Gold flowering stage	0.232
	SRR8316907	Gold flowering stage	0.252
	SRR8316908	Gold flowering stage	0.217
SRP132670	SRR6706286	Control	3.764
	SRR6706287	Light intensity 50%	2.897
	SRR6706288	Light intensity 20%	3.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.218
	CNS0095593	Slightly white alabastrum(diploid) 2	0.676
	CNS0095594	Slightly white alabastrum(diploid) 3	1.106
	CNS0095595	Whole white alabastrum(diploid) 2	0.700
	CNS0095596	Whole white alabastrum(diploid) 3	1.012
	CNS0095597	Whole white alabastrum(diploid) 4	0.759
	CNS0095598	Silvery flower (diploied) 1	1.226
	CNS0095599	Silvery flower (diploied) 2	0.317
	CNS0095600	Silvery flower (diploied) 3	0.362
	CNS0095601	Golden flower (diploid) 1	0.358
	CNS0095602	Golden flower (diploid) 2	0.321
	CNS0095603	Golden flower (diploid) 3	1.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.972
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.408
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.436
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.693
	CNS0095610	Silvery flower (tetraploid) 1	0.350
	CNS0095611	Silvery flower (tetraploid) 2	0.436
	CNS0095612	Silvery flower (tetraploid) 3	0.277
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.300
	CNS0095615	Golden flower (tetraploid) 3	0.092
CRA001975	CRR073297	Stem 1	1.102
	CRR073298	Stem 2	1.203
	CRR073299	Stem 3	1.659
	CRR073300	Leaf 1	1.386
	CRR073301	Leaf 2	1.407
	CRR073302	Leaf 3	0.902
	CRR073303	Juvenile bud 1	0.841
	CRR073304	Juvenile bud 2	0.539
	CRR073305	Juvenile bud 3	1.191
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.369
	CRR073308	Third green 3	0.044
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.026
	CRR073313	Silver flowering 2	0.069
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.780
	CRR073316	Gold flowering 2	1.110
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.724
	CRR073319	Tawny withering 2	1.195
	CRR073320	Tawny withering 3	0.756