Detail information of GWHGAAZE031292


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011090395.12.92802E-95PREDICTED: axial regulator YABBY 1 [Sesamum indicum]
Swissprottr|O22152|YAB1_ARATH4E-65Axial regulator YABBY 1
trEMBLtr|Q6SS00|Q6SS00_ANTMA7E-93YABBY-like transcription factor GRAMINIFOLIA {ECO:0000313|EMBL:AAS10177.1}
TAIR10AT2G45190.11E-52Plant-specific transcription factor YABBY family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5668892056692633-
GWHAAZE00000009mRNA5668892056692633-
GWHAAZE00000009exon5668892056689010-
GWHAAZE00000009exon5669048456690532-
GWHAAZE00000009exon5669121156691331-
GWHAAZE00000009exon5669189156692046-
GWHAAZE00000009exon5669252056692633-
GWHAAZE00000009CDS5669252056692633-
GWHAAZE00000009CDS5669189156692046-
GWHAAZE00000009CDS5669121156691331-
GWHAAZE00000009CDS5669048456690532-
GWHAAZE00000009CDS5668892056689010-
Transcript Sequence

Network for GWHGAAZE031292

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04690.14YABBY211721.60E-63
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-YABBY

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0007275biological_processmulticellular organism development

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.743
SRR3591706second leaf42.408
SRR3591707mature leaf11.991
SRR3591708Shoot apex73.905
SRR3591709Stem0.620
SRR3591710White floral bud14.369
SRR3591711White flower18.026
SRR3591712Green floral bud16.416
SRR3591713Yellow flower15.107
SRP173429 SRR8316895Juvenile bud stage 20.601
SRR8316896Juvenile bud stage 21.883
SRR8316897Juvenile bud stage 18.264
SRR8316894Third green stage 11.406
SRR8316900Third green stage 27.546
SRR8316901Third green stage 19.130
SRR8316898Complete white stage 4.755
SRR8316899Complete white stage 18.381
SRR8316903Complete white stage 9.880
SRR8316902Silver flowering stage3.220
SRR8316904Silver flowering stage7.460
SRR8316905Silver flowering stage4.587
SRR8316906Gold flowering stage 13.024
SRR8316907Gold flowering stage 8.461
SRR8316908Gold flowering stage 5.986
SRP132670SRR6706286Control32.084
SRR6706287Light intensity 50%32.360
SRR6706288Light intensity 20%37.589
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.852
CNS0095593Slightly white alabastrum(diploid) 213.981
CNS0095594Slightly white alabastrum(diploid) 313.990
CNS0095595Whole white alabastrum(diploid) 210.882
CNS0095596Whole white alabastrum(diploid) 37.438
CNS0095597Whole white alabastrum(diploid) 47.364
CNS0095598Silvery flower (diploied) 14.516
CNS0095599Silvery flower (diploied) 23.949
CNS0095600Silvery flower (diploied) 37.353
CNS0095601Golden flower (diploid) 11.055
CNS0095602Golden flower (diploid) 23.211
CNS0095603Golden flower (diploid) 32.038
CNS0095604Slightly white alabastrum(tetraploid) 122.403
CNS0095605Slightly white alabastrum(tetraploid) 220.528
CNS0095606Slightly white alabastrum(tetraploid) 335.979
CNS0095607Whole white alabastrum(tetraploid) 16.654
CNS0095608Whole white alabastrum(tetraploid) 26.786
CNS0095609Whole white alabastrum(tetraploid) 314.751
CNS0095610Silvery flower (tetraploid) 16.805
CNS0095611Silvery flower (tetraploid) 28.673
CNS0095612Silvery flower (tetraploid) 312.967
CNS0095613Golden flower (tetraploid) 14.590
CNS0095614Golden flower (tetraploid) 25.439
CNS0095615Golden flower (tetraploid) 36.563
CRA001975CRR073297Stem 164.859
CRR073298Stem 258.031
CRR073299Stem 363.956
CRR073300Leaf 143.329
CRR073301Leaf 251.021
CRR073302Leaf 334.661
CRR073303Juvenile bud 142.071
CRR073304Juvenile bud 228.837
CRR073305Juvenile bud 334.729
CRR073306Third green 115.123
CRR073307Third green 210.276
CRR073308Third green 311.275
CRR073309Second white 116.729
CRR073310Second white 220.998
CRR073311Second white 317.908
CRR073312Silver flowering 115.393
CRR073313Silver flowering 214.404
CRR073314Silver flowering 320.008
CRR073315Gold flowering 10.983
CRR073316Gold flowering 21.844
CRR073317Gold flowering 33.496
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000