Detail information of GWHGAAZE031267


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009602486.14.26571E-17PREDICTED: malate dehydrogenase, cytoplasmic-like isoform X3 [Nicotiana tomentosiformis]
trEMBLtr|A0A061DWB5|A0A061DWB5_THECC3E-13Lactate/malate dehydrogenase family protein isoform 1 {ECO:0000313|EMBL:EOX96366.1}

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5618846756189204+
GWHAAZE00000009mRNA5618846756189204+
GWHAAZE00000009exon5618846756188509+
GWHAAZE00000009exon5618899056189204+
GWHAAZE00000009CDS5618846756188509+
GWHAAZE00000009CDS5618899056189204+
Transcript Sequence

Network for GWHGAAZE031267

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00025MDH1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.604
SRR3591706second leaf7.601
SRR3591707mature leaf4.424
SRR3591708Shoot apex4.061
SRR3591709Stem3.000
SRR3591710White floral bud0.463
SRR3591711White flower0.152
SRR3591712Green floral bud2.313
SRR3591713Yellow flower0.370
SRP173429 SRR8316895Juvenile bud stage 1.094
SRR8316896Juvenile bud stage 3.910
SRR8316897Juvenile bud stage 1.737
SRR8316894Third green stage 0.732
SRR8316900Third green stage 2.492
SRR8316901Third green stage 2.085
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.563
SRR8316903Complete white stage 0.068
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.055
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.388
SRR6706287Light intensity 50%1.452
SRR6706288Light intensity 20%1.112
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.984
CNS0095593Slightly white alabastrum(diploid) 23.081
CNS0095594Slightly white alabastrum(diploid) 31.695
CNS0095595Whole white alabastrum(diploid) 21.304
CNS0095596Whole white alabastrum(diploid) 30.618
CNS0095597Whole white alabastrum(diploid) 40.036
CNS0095598Silvery flower (diploied) 10.018
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.112
CNS0095604Slightly white alabastrum(tetraploid) 13.031
CNS0095605Slightly white alabastrum(tetraploid) 22.285
CNS0095606Slightly white alabastrum(tetraploid) 33.669
CNS0095607Whole white alabastrum(tetraploid) 10.593
CNS0095608Whole white alabastrum(tetraploid) 20.256
CNS0095609Whole white alabastrum(tetraploid) 31.899
CNS0095610Silvery flower (tetraploid) 10.097
CNS0095611Silvery flower (tetraploid) 20.783
CNS0095612Silvery flower (tetraploid) 30.298
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.210
CNS0095615Golden flower (tetraploid) 30.011
CRA001975CRR073297Stem 13.133
CRR073298Stem 22.974
CRR073299Stem 33.824
CRR073300Leaf 10.730
CRR073301Leaf 21.082
CRR073302Leaf 30.725
CRR073303Juvenile bud 10.410
CRR073304Juvenile bud 20.298
CRR073305Juvenile bud 30.283
CRR073306Third green 10.047
CRR073307Third green 20.000
CRR073308Third green 30.076
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.750
CRR073316Gold flowering 22.456
CRR073317Gold flowering 32.720
CRR073318Tawny withering 10.403
CRR073319Tawny withering 21.057
CRR073320Tawny withering 30.308