Gene detail

Detail information of GWHGAAZE031257

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009779099.1	0	PREDICTED: dnaJ protein homolog [Nicotiana sylvestris]
COG	YP_002731607.1	1E-59	chaperone protein DnaJ
Swissprot	tr\|Q04960\|DNJH_CUCSA	1E-171	DnaJ protein homolog (Precursor)
trEMBL	tr\|A0A061DUH3\|A0A061DUH3_THECC	0	DNAJ {ECO:0000313\|EMBL:EOX96390.1}
TAIR10	AT3G44110.1	3E-123	DNAJ homologue 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55980009	55984510	+
GWHAAZE00000009	mRNA	55980009	55984510	+
GWHAAZE00000009	exon	55980009	55980158	+
GWHAAZE00000009	exon	55980260	55980416	+
GWHAAZE00000009	exon	55980500	55980638	+
GWHAAZE00000009	exon	55980939	55981072	+
GWHAAZE00000009	exon	55981387	55981529	+
GWHAAZE00000009	exon	55983266	55983451	+
GWHAAZE00000009	exon	55984184	55984510	+
GWHAAZE00000009	CDS	55980009	55980158	+
GWHAAZE00000009	CDS	55980260	55980416	+
GWHAAZE00000009	CDS	55980500	55980638	+
GWHAAZE00000009	CDS	55980939	55981072	+
GWHAAZE00000009	CDS	55981387	55981529	+
GWHAAZE00000009	CDS	55983266	55983451	+
GWHAAZE00000009	CDS	55984184	55984510	+

Transcript Sequence
>GWHTAAZE031291 ATGTTTGGTCGTGCTCCAAGGAGGAGCAATAACACAAAGTATTACGATGTTCTTGGTGTTTCAAACAGTGCAAGTCAAGATGAAATCAAGAAGGCATATAAAAAGTCTGCCATAATAAATCATCCTGATAAGGGCGGAGACCCTGAAAAGTTCAAGGAGTTGTCTCAAGCATACGAAGTTCTTGGTGATCCAAAGAAAAGAGAATCGTATGATGAATACGGTGAAGACGGGGGAACTGGAGCTGGTGAAACCTCTGATAATCCATTTGATATATTTGAATCATTTTTTGGAGGTGGAGCTTTTAACGGTTTTGGTAGTTCTAGTGTTAGAAAGAAGCAAGGGGAAGATGTTGTTCATCCTCTAAATGTTTCTTTGGAGGAGGTGTATAATGGCGCAACAAAGAAATTCAATCTCTCCAGGAATGTTATGTGTTCAAAATGTAAAGGGAAAGGTACGAAGAGTGGAAAATCAGCTACATGTTATGGATGCCAAGGATGTGGCATGAGGACTATATCGTGGCGTATTGGACCTGGAATGGTCCAAAAGATGCAATACGTCTGCCCTGAATGCAAAGGCGCTGGAGAGATGATAAATGAGAGAGATCGATGTGGACATTGCAAAGGAAAGAAGGTTACACTCGAAAAGAAAACGGTGCAAGTAAAAGTTGAGGCTGGGATGCAGCATGGCCAGAGGATTGTGTTTGATGGAGAAGCTGATGAAGCCCCTGATACAGTCACGGGTGATCTCGTGTTCGTATTGAAAGTGAAGAAGCACCCGTTGTTCGAGCGGGAGGGTGACAATCTTCATGTAGAACACACCCTCAGTTTAACTGAAGCTCTTTGCGGGTTTCAGTTTGCCCTAACTCATCTTGATGGCAGGCTGCTTCTTATCAAATCTAAACCTGGCGAGTCCAAGGCAATCAACGACGAAGGAATGCCAAATTACAAGATGCCATTCGTAAAGGGACGGCTATTCATCTTTTTTAACGTCGATTTTCCCAAATCAGGGTTCCTGTCTCCTGAAAAGTCCCAAATCTTTGAGAACATTTTACCCTCTAGCCCAACCAATCGCTTATCTGATATGGCACTTGAAGACTGCAAGGAAACCATTTTGCATGACGTAGACATGGAGAAAGAGATGAGGCGCAAGGAGCGAAAATGGCAAGAGGCTTACGATGAAGATGATGACGACGACGACATGCCAGATGTGCATAGAATGGCATGTAACCAGCAATAA

Network for GWHGAAZE031257

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	13	71	7.90E-22
PF01556.19	DnaJ_C	118	333	2.30E-40
PF00684.20	DnaJ_CXXCXGXG	144	210	1.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09503	DNAJA2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0009408	biological_process	response to heat
GO:0031072	molecular_function	heat shock protein binding
GO:0051082	molecular_function	unfolded protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.263
	SRR3591706	second leaf	13.905
	SRR3591707	mature leaf	9.452
	SRR3591708	Shoot apex	20.715
	SRR3591709	Stem	18.383
	SRR3591710	White floral bud	21.953
	SRR3591711	White flower	25.357
	SRR3591712	Green floral bud	24.127
	SRR3591713	Yellow flower	20.747
SRP173429	SRR8316895	Juvenile bud stage	12.027
	SRR8316896	Juvenile bud stage	17.000
	SRR8316897	Juvenile bud stage	10.902
	SRR8316894	Third green stage	8.498
	SRR8316900	Third green stage	19.681
	SRR8316901	Third green stage	22.656
	SRR8316898	Complete white stage	12.437
	SRR8316899	Complete white stage	24.338
	SRR8316903	Complete white stage	19.139
	SRR8316902	Silver flowering stage	10.801
	SRR8316904	Silver flowering stage	14.663
	SRR8316905	Silver flowering stage	6.062
	SRR8316906	Gold flowering stage	22.663
	SRR8316907	Gold flowering stage	21.133
	SRR8316908	Gold flowering stage	26.691
SRP132670	SRR6706286	Control	20.859
	SRR6706287	Light intensity 50%	21.800
	SRR6706288	Light intensity 20%	22.108
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.399
	CNS0095593	Slightly white alabastrum(diploid) 2	15.110
	CNS0095594	Slightly white alabastrum(diploid) 3	13.878
	CNS0095595	Whole white alabastrum(diploid) 2	15.259
	CNS0095596	Whole white alabastrum(diploid) 3	19.072
	CNS0095597	Whole white alabastrum(diploid) 4	11.949
	CNS0095598	Silvery flower (diploied) 1	13.744
	CNS0095599	Silvery flower (diploied) 2	13.350
	CNS0095600	Silvery flower (diploied) 3	15.582
	CNS0095601	Golden flower (diploid) 1	11.704
	CNS0095602	Golden flower (diploid) 2	11.405
	CNS0095603	Golden flower (diploid) 3	12.288
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.462
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.184
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.980
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.861
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.695
	CNS0095610	Silvery flower (tetraploid) 1	19.690
	CNS0095611	Silvery flower (tetraploid) 2	16.072
	CNS0095612	Silvery flower (tetraploid) 3	14.718
	CNS0095613	Golden flower (tetraploid) 1	8.280
	CNS0095614	Golden flower (tetraploid) 2	16.212
	CNS0095615	Golden flower (tetraploid) 3	12.652
CRA001975	CRR073297	Stem 1	19.058
	CRR073298	Stem 2	20.677
	CRR073299	Stem 3	18.575
	CRR073300	Leaf 1	20.401
	CRR073301	Leaf 2	22.137
	CRR073302	Leaf 3	21.192
	CRR073303	Juvenile bud 1	22.113
	CRR073304	Juvenile bud 2	19.493
	CRR073305	Juvenile bud 3	19.703
	CRR073306	Third green 1	10.803
	CRR073307	Third green 2	11.471
	CRR073308	Third green 3	10.763
	CRR073309	Second white 1	11.395
	CRR073310	Second white 2	11.759
	CRR073311	Second white 3	9.646
	CRR073312	Silver flowering 1	8.074
	CRR073313	Silver flowering 2	5.237
	CRR073314	Silver flowering 3	5.185
	CRR073315	Gold flowering 1	12.384
	CRR073316	Gold flowering 2	12.121
	CRR073317	Gold flowering 3	6.431
	CRR073318	Tawny withering 1	21.077
	CRR073319	Tawny withering 2	19.848
	CRR073320	Tawny withering 3	18.605