Gene detail

Detail information of GWHGAAZE031213

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086198.1	0	PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Sesamum indicum]
COG	NP_109708.1	3E-26	helicase-like protein
Swissprot	tr\|F4I8S3\|CLSY3_ARATH	0	SNF2 domain-containing protein CLASSY 3
trEMBL	tr\|A0A059C1R9\|A0A059C1R9_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW71855.1}
TAIR10	AT1G05490.1	0	chromatin remodeling 31

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55110721	55117992	+
GWHAAZE00000009	mRNA	55110721	55117992	+
GWHAAZE00000009	exon	55110721	55110859	+
GWHAAZE00000009	exon	55110952	55111236	+
GWHAAZE00000009	exon	55111408	55111500	+
GWHAAZE00000009	exon	55113230	55113418	+
GWHAAZE00000009	exon	55113633	55113731	+
GWHAAZE00000009	exon	55114508	55115022	+
GWHAAZE00000009	exon	55115664	55115822	+
GWHAAZE00000009	exon	55116100	55117992	+
GWHAAZE00000009	CDS	55110721	55110859	+
GWHAAZE00000009	CDS	55110952	55111236	+
GWHAAZE00000009	CDS	55111408	55111500	+
GWHAAZE00000009	CDS	55113230	55113418	+
GWHAAZE00000009	CDS	55113633	55113731	+
GWHAAZE00000009	CDS	55114508	55115022	+
GWHAAZE00000009	CDS	55115664	55115822	+
GWHAAZE00000009	CDS	55116100	55117992	+

Transcript Sequence
>GWHTAAZE031247 CCTGGGGGTGATACTAATCAACATGAGAGTGAAGATAAGAAAGTAAAAGGGAATGGAGGCAATGAGGTGGCTGGTTGTAACATGGAGTCTGAACCAAGTACTGGACGGCATGAAGGTGATGAGCTTCAAGTGGAAGAAGGCATGAACTGTGACAAGGGCGATTATCAGGCACTCGAGTTCGAAACTAATAAAACCAACTCTGATGCTAAGATGGGGTTGAAATCAAAATTGGGATCCAATGAAGGCAATGGTTCACCTAAGGCTAAGAATTTTCGTCTCGTGGATTATTCGGACGATTCTCTTTCTTCAAGTGATACTTCTTCAAGTGATACAAATGGAGATGATTCACTTTCTTCAAGTGATACATTCGATGACAATTCAGATGATGATACGGATAGTGTTTGGTCAAGCTCTTCTGAGGAAGGGTCTGATGATTTGGAGAATGATGCTGTCAAGTTTAGAAACAAAGTGAGACATGCTAAGACGAAGCCTAAATCGAAAGTTGCATTTAGTGAAGGTGAAGATCTGGCAGTGCCATTGAGACCTCGAACAAGGGCCAAGGGATTGAAGGCTAAATCTCAGATTCCAGCTGGTAGTTCAGGTCAAAATCAATGCAAGAGTCGGCTTACGAAGAAGAATGGTCCACTGGCTGAGAAGGATCCATCTGATTCCTTGGATAGTGATGGTTCATGCTCTTCTGGAGATGTAATATTTGTACAGGATAATTATGAGTCTGAAGAAAGTGGTGGTCATTTTGGAAGCAAAAACACAGATCATGCATCTAAGGAGAAGACTAAATCAAAAGATAATGATGATCATTCTAAGGAAATTGATATGCATGGTGACAAAGATATGCACTATTCCAATTCCACCAAATCTAAGAAAGCTGGATCTAAAAGGAAGTCGTTGGCTAATGAAAGTATCAATGCCCCTTTAGGTGAAGATCCGGCAGTATCATTTGGACCTAGAAAAGGTCAAAGTCTACTTGGGAGTTCGCTTAGGAAGAATCCTCTGGAAGTTGACAATGAAGAGGAGGAAACACGTATCCCCACTAAGAGGAGACGCGTTGCTGCATCTAATGACTATGATATCTTCAAAGTCTTTGTTGATTCGATTTTGGATAAAGGGGTGATTGATGGCCAAAAAGAAGCCAAGCAGTCACCTCAGGTTGAGAATGAACTTCCTTTGAAGTTTAGGTTCGAGGATGAGGTTTCGGAGCCGCCAGAGAAAACCGAATTCGAGGAAATGGTGGAAAAATTGTTTGCCGAGATGGAGTTTGCTCTAAAATGCGGGGAAATAGGTTCCTTGGAATCCGCTTTGGATGGGAATGAAGATCTCAATGCTCCCGAGACTGAAATGAATCAATTGGAGCTTTGCCGTAAAGGGAAGCATCACCTTATTCTTGATGAGGAAATCGGAATAAGATGCATATACTGTTCTACTGTGGTGCTGGAGATCAAATATGTTACACCGCCATTTAAAAAATTTAAATCAGGAATGTCAGAAAGACAAAGGTGTATGTACGAAAGTGGCGGCTCTTTATCTGACGGCCTTCAAGTCAAAGACTCAACCGATGATTCACAGGTTTTGTGCACAGGCACTGTTTGGGACTTGGTACCCGGCATCAGGGATACCATGTATCCGCACCAAAAGGAAGGAGTCGAGTTCATTTGGAAAAACTTGGAAGGGACAATTCAGTTAGATGAGTTGAAGGATAATGATTCAAATGGGGTGGGTGGGTGTATTATTTCACATGCCCCGGGAACTGGGAAAACACGATTAACCATTGTGTTTATGCAGACATATTTGAAGTTATTCCCGAACTGTCGGCCTGTCATTATTGCCCCTGCTGGTATGCTATTGACTTGGGAAGAGGAATTCAGGAAATGGAAAGTTGATTTCCCTTTCCATAACCTCAACAGTAAGGAGCTGTCAGGGAAAGAAAGCGAGCTAGCGCTAGATCTCTTTTGGAGCAGCAAGCACAAACGGACAGATAGAAGTCGGTTGGTAAAGTTGTCCTCTTGGTGCCACAATCCAAGCATACTTGGAGTGAGCTACAGTCTTTATGAGAAGCTTGCTGGTGAGAAATCGGTAGGAGGGAAAGGAAAAAGAAAGCGCATGAAAGTTGTACAAAACAATCAACATGAAGTGGTGAGGAGAACATTGCTTGACGTCCCTGGTTTAGTAGTTCTTGATGAAGGGCATACGCCTCGTAATGAGAGAAGTTCCATCTGGAATACTCTATTGAATATGCAAACAGAAAAGAGGATCATATTATCGGGAACGCCGTTTCAAAACAACTTTGGTGAGCTGTTTAATACTTTGCATATAGTAAGACCAACCGTTGCTGACTTACTTGCAAAGGACAAGACATTTGGGGAGTCGAAGAGGAAGTATTTCAGAAATAAAGCTAGAGGAAAAGGGTCTGTTCCTTTTAGTACTTCAAGCGAGAAAATTTCCGATGACTCCATTGAGAAGCTCAAAGCAACAATAGCACCTTTTGTTCATGTTCACAAAGGGAGCATTCTTCAACGAAGTCTTCCCGGTTTAAGGGACAGCTTTGTTTTTCTAAACCCTGCTCCGCTTCAAAAGCAAACCATTGAGCAGATCGAGAGGGCACAAAACACTTTTGAGCTGGAGCATAAGGTGGCATTGGTCTCAATCCATCCATCTCTTATCCAGCACTGTTCTTTATCGGGCAAAGAGCATAATGTCATTGACAAAGAAGAATTAGAAAAACATGCGCTTAACCCCGAAAAAGGCGTTAAAACAAGGTTCATAATGGAACTAATACGCCTAAGTGAAGCTGTGAATGAAAAGGTCTTGATATTCAGCCAGTATGTGGACCCACTAGGCTTTATCAAGGACCAACTTAAATCGGTGTTTGGGTGGGATGACGGGAGGCAAGTTTTGCAAATGCAGGGCAAAGTCGACCAGAAACTTAGACAAGGCCTGATAAACCTGTTCAATGACCCAAAAAGCGAGGCAAAGGTGTTGTTGGCTTCAACAAAGTGTTGCTCCGAGGGGATTAATCTTGTCGGGGCCTCTCGGGTCATTTTGCTTGATGTAGTTTGGAACCCCTCTGTTGAGAGGCAAGCTATAAGCCGAGCCTATAGACTTGGACAGAAGAAAGTGGTCTACACGTATCATCTGATGACATCCGGCACCACCGAGGGGGATAAGTATGGTCGGCAAGCTGAAAAGTACCGCTTATCCGAGCTTGTGTTTTCTTCCGATAGCAAAGAGAAGAATGATAAACAGGATAATAGTGGTGAAAAGTTCAATGACAAGATTTTGGAAGAGATGGTTGGACACATAAAGCTCAAGGATATGTTTAAGGAAATATTTACCAGCCAAAGGAAACTAAGTTAG

Network for GWHGAAZE031213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	575	868	2.60E-18
PF00271.32	Helicase_C	925	1041	4.40E-15

Protein Sequence

>GWHPAAZE031231
PGGDTNQHESEDKKVKGNGGNEVAGCNMESEPSTGRHEGDELQVEEGMNCDKGDYQALEFETNKTNSDAKMGLKSKLGSNEGNGSPKAKNFRLVDYSDDSLSSSDTSSSDTNGDDSLSSSDTFDDNSDDDTDSVWSSSSEEGSDDLENDAVKFRNKVRHAKTKPKSKVAFSEGEDLAVPLRPRTRAKGLKAKSQIPAGSSGQNQCKSRLTKKNGPLAEKDPSDSLDSDGSCSSGDVIFVQDNYESEESGGHFGSKNTDHASKEKTKSKDNDDHSKEIDMHGDKDMHYSNSTKSKKAGSKRKSLANESINAPLGEDPAVSFGPRKGQSLLGSSLRKNPLEVDNEEEETRIPTKRRRVAASNDYDIFKVFVDSILDKGVIDGQKEAKQSPQVENELPLKFRFEDEVSEPPEKTEFEEMVEKLFAEMEFALKCGEIGSLESALDGNEDLNAPETEMNQLELCRKGKHHLILDEEIGIRCIYCSTVVLEIKYVTPPFKKFKSGMSERQRCMYESGGSLSDGLQVKDSTDDSQVLCTGTVWDLVPGIRDTMYPHQKEGVEFIWKNLEGTIQLDELKDNDSNGVGGCIISHAPGTGKTRLTIVFMQTYLKLFPNCRPVIIAPAGMLLTWEEEFRKWKVDFPFHNLNSKELSGKESELALDLFWSSKHKRTDRSRLVKLSSWCHNPSILGVSYSLYEKLAGEKSVGGKGKRKRMKVVQNNQHEVVRRTLLDVPGLVVLDEGHTPRNERSSIWNTLLNMQTEKRIILSGTPFQNNFGELFNTLHIVRPTVADLLAKDKTFGESKRKYFRNKARGKGSVPFSTSSEKISDDSIEKLKATIAPFVHVHKGSILQRSLPGLRDSFVFLNPAPLQKQTIEQIERAQNTFELEHKVALVSIHPSLIQHCSLSGKEHNVIDKEELEKHALNPEKGVKTRFIMELIRLSEAVNEKVLIFSQYVDPLGFIKDQLKSVFGWDDGRQVLQMQGKVDQKLRQGLINLFNDPKSEAKVLLASTKCCSEGINLVGASRVILLDVVWNPSVERQAISRAYRLGQKKVVYTYHLMTSGTTEGDKYGRQAEKYRLSELVFSSDSKEKNDKQDNSGEKFNDKILEEMVGHIKLKDMFKEIFTSQRKLS

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.191
	SRR3591706	second leaf	0.029
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.043
	SRR3591709	Stem	0.588
	SRR3591710	White floral bud	0.056
	SRR3591711	White flower	0.167
	SRR3591712	Green floral bud	0.461
	SRR3591713	Yellow flower	0.746
SRP173429	SRR8316895	Juvenile bud stage	0.156
	SRR8316896	Juvenile bud stage	0.316
	SRR8316897	Juvenile bud stage	0.032
	SRR8316894	Third green stage	0.144
	SRR8316900	Third green stage	0.314
	SRR8316901	Third green stage	0.393
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	0.658
	SRR8316903	Complete white stage	0.080
	SRR8316902	Silver flowering stage	0.120
	SRR8316904	Silver flowering stage	0.073
	SRR8316905	Silver flowering stage	0.051
	SRR8316906	Gold flowering stage	0.350
	SRR8316907	Gold flowering stage	0.114
	SRR8316908	Gold flowering stage	0.350
SRP132670	SRR6706286	Control	0.389
	SRR6706287	Light intensity 50%	0.522
	SRR6706288	Light intensity 20%	0.391
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.098
	CNS0095593	Slightly white alabastrum(diploid) 2	0.019
	CNS0095594	Slightly white alabastrum(diploid) 3	0.171
	CNS0095595	Whole white alabastrum(diploid) 2	0.122
	CNS0095596	Whole white alabastrum(diploid) 3	0.107
	CNS0095597	Whole white alabastrum(diploid) 4	0.308
	CNS0095598	Silvery flower (diploied) 1	0.023
	CNS0095599	Silvery flower (diploied) 2	0.038
	CNS0095600	Silvery flower (diploied) 3	0.481
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.197
	CNS0095603	Golden flower (diploid) 3	0.198
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.384
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.008
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.094
	CNS0095610	Silvery flower (tetraploid) 1	0.114
	CNS0095611	Silvery flower (tetraploid) 2	0.111
	CNS0095612	Silvery flower (tetraploid) 3	0.088
	CNS0095613	Golden flower (tetraploid) 1	0.026
	CNS0095614	Golden flower (tetraploid) 2	0.202
	CNS0095615	Golden flower (tetraploid) 3	0.007
CRA001975	CRR073297	Stem 1	0.282
	CRR073298	Stem 2	0.272
	CRR073299	Stem 3	0.169
	CRR073300	Leaf 1	0.160
	CRR073301	Leaf 2	0.346
	CRR073302	Leaf 3	0.116
	CRR073303	Juvenile bud 1	0.298
	CRR073304	Juvenile bud 2	0.059
	CRR073305	Juvenile bud 3	0.410
	CRR073306	Third green 1	0.109
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	0.035
	CRR073310	Second white 2	0.135
	CRR073311	Second white 3	0.153
	CRR073312	Silver flowering 1	0.109
	CRR073313	Silver flowering 2	0.454
	CRR073314	Silver flowering 3	0.089
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.047
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.029
	CRR073319	Tawny withering 2	0.062
	CRR073320	Tawny withering 3	0.008