Gene detail

Detail information of GWHGAAZE031212

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093490.1	0	PREDICTED: probable receptor-like protein kinase At5g47070 [Sesamum indicum]
COG	YP_003267608.1	4E-23	serine/threonine protein kinase
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	7E-153	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|A0A068UM63\|A0A068UM63_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09392.1}
TAIR10	AT5G47070.1	2E-116	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	55069426	55072156	-
GWHAAZE00000009	mRNA	55069426	55072156	-
GWHAAZE00000009	exon	55069426	55069980	-
GWHAAZE00000009	exon	55070554	55070676	-
GWHAAZE00000009	exon	55070805	55071065	-
GWHAAZE00000009	exon	55071815	55072156	-
GWHAAZE00000009	CDS	55071815	55072156	-
GWHAAZE00000009	CDS	55070805	55071065	-
GWHAAZE00000009	CDS	55070554	55070676	-
GWHAAZE00000009	CDS	55069426	55069980	-

Transcript Sequence
>GWHTAAZE031246 ATGAAGTGTTTCCATTATTTCAAAGATAGAACAAGAAGTAGAGAACAAAAATCAGCACCAATATTAAAAGACCAAAGCAAATCAGATGTTTCAACAGTTGAGCGGGTGACTAAATCTTCAGGCTCGGCCACTTCTATCCCTGAATTGTATGAAGAAAAAGGTCAAAACTTGCGTGTCTTTTCGTTCTCGGAGCTCAAGCATGCCACTAATGGCTTCAATAGGGTACTTAAGATTGGGGAAGGAGGATTTGGAAGTGTATACAAGGGTAGAATCAAGCCTGTGGGTGGAAAAGGTGACCCAATTGAGGTTGCGATTAAAAAACTCAACAGAGATGGCTTTCAGGGTCATAAACAATGGGTGGCCGAAGTACAATTTTTGGGAGTTGTGGAGCACCCGAATCTCGTCAAACTCATTGGATACTGTGCCGAAGATGGAGAAAGAGGGATCCAACGGCTACTAGTATACGAGTTCATGCCAAACAGAAGCCTCGAAGATAATCTTTTCAATAAGGCTTATCCGGCTCTTCCTTGGGGAAGAAGATTGCAGATACTGCTTGGAGCGGCACAAGGATTAGCTTATTTGCATGAAGAGTTAGAAGTCCAGGTAATATTTCGAGATTTTAAGGCATCAAATGTGTTGTTGGATGAGGACTTCAAACCGAAGCTTTCGGATTTTGGGCTTGCGAGGGAGGGGCCAACAGGTGAACACACTCATGTTTCAACCGCGGTTGTGGGAACATACGGGTATGCCGCCCCGGATTACATTGAAACGGGACACCTCACAAGTAAAAGCGATGTGTGGAGTTTCGGTGTGGTGCTTTACGAGATCTTATCCGGCAGGCGGTCACTAGAAAGAAACAAACCTCGAACAGAACAAAAACTCTTGGAATGGGTGAAACAATTTCCGGTTGAAAGTAAGAGATTCGGCATGATAATGGACCCGAGACTTGAGACAAAATACTCCCTTGGCGCAGCTCGAAAGATCGCCAAGTTAGCCGAGAGTTGCTTGTTAAAGAGTGCAAAGGAACGACCGAAGATGAGTCAGGTGGTGGAAAATTTGAAGGAGATAATTCAAGTTTTGGGTGAAGGAAGCCCATCTGATTGTAATTTCAGGTGCGTTGAAGACGATTTAGTAGACCCGACAAACAAGAAGCCAAACAAAATGGGGTCTGCCTCGGAATCCGCAAAAAGGCGAGTGGCCCACTTGGCTAAGCTGGGTGAACATGTTGGTGGGATTAGTAGGAGAGGGTTTATGATCATGCAGAGGGCTAAAGTGCCTTGA

Network for GWHGAAZE031212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	77	353	5.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.948
	SRR3591706	second leaf	1.646
	SRR3591707	mature leaf	2.156
	SRR3591708	Shoot apex	5.462
	SRR3591709	Stem	11.478
	SRR3591710	White floral bud	9.995
	SRR3591711	White flower	19.924
	SRR3591712	Green floral bud	10.118
	SRR3591713	Yellow flower	75.092
SRP173429	SRR8316895	Juvenile bud stage	2.729
	SRR8316896	Juvenile bud stage	5.552
	SRR8316897	Juvenile bud stage	2.167
	SRR8316894	Third green stage	3.854
	SRR8316900	Third green stage	3.140
	SRR8316901	Third green stage	4.140
	SRR8316898	Complete white stage	2.289
	SRR8316899	Complete white stage	9.648
	SRR8316903	Complete white stage	4.763
	SRR8316902	Silver flowering stage	4.380
	SRR8316904	Silver flowering stage	9.061
	SRR8316905	Silver flowering stage	2.986
	SRR8316906	Gold flowering stage	35.659
	SRR8316907	Gold flowering stage	18.452
	SRR8316908	Gold flowering stage	38.031
SRP132670	SRR6706286	Control	4.045
	SRR6706287	Light intensity 50%	4.375
	SRR6706288	Light intensity 20%	3.587
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.347
	CNS0095593	Slightly white alabastrum(diploid) 2	8.193
	CNS0095594	Slightly white alabastrum(diploid) 3	5.867
	CNS0095595	Whole white alabastrum(diploid) 2	4.427
	CNS0095596	Whole white alabastrum(diploid) 3	2.357
	CNS0095597	Whole white alabastrum(diploid) 4	3.401
	CNS0095598	Silvery flower (diploied) 1	4.940
	CNS0095599	Silvery flower (diploied) 2	5.629
	CNS0095600	Silvery flower (diploied) 3	5.897
	CNS0095601	Golden flower (diploid) 1	9.371
	CNS0095602	Golden flower (diploid) 2	14.767
	CNS0095603	Golden flower (diploid) 3	13.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.376
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.436
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.908
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.837
	CNS0095610	Silvery flower (tetraploid) 1	3.877
	CNS0095611	Silvery flower (tetraploid) 2	3.009
	CNS0095612	Silvery flower (tetraploid) 3	3.805
	CNS0095613	Golden flower (tetraploid) 1	10.346
	CNS0095614	Golden flower (tetraploid) 2	7.403
	CNS0095615	Golden flower (tetraploid) 3	8.931
CRA001975	CRR073297	Stem 1	6.474
	CRR073298	Stem 2	4.169
	CRR073299	Stem 3	2.321
	CRR073300	Leaf 1	7.479
	CRR073301	Leaf 2	9.350
	CRR073302	Leaf 3	5.092
	CRR073303	Juvenile bud 1	3.111
	CRR073304	Juvenile bud 2	2.789
	CRR073305	Juvenile bud 3	4.104
	CRR073306	Third green 1	1.286
	CRR073307	Third green 2	0.580
	CRR073308	Third green 3	1.965
	CRR073309	Second white 1	0.884
	CRR073310	Second white 2	1.566
	CRR073311	Second white 3	4.145
	CRR073312	Silver flowering 1	12.190
	CRR073313	Silver flowering 2	6.764
	CRR073314	Silver flowering 3	11.090
	CRR073315	Gold flowering 1	2.043
	CRR073316	Gold flowering 2	1.610
	CRR073317	Gold flowering 3	0.504
	CRR073318	Tawny withering 1	7.383
	CRR073319	Tawny withering 2	6.310
	CRR073320	Tawny withering 3	6.296