Gene detail

Detail information of GWHGAAZE031193

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009586976.1	0	PREDICTED: putative ABC transporter C family member 15 [Nicotiana tomentosiformis]
COG	NP_969385.1	1E-166	multidrug ABC transporter permease/ATPase
Swissprot	tr\|Q9M1C7\|AB9C_ARATH	0	ABC transporter C family member 9
trEMBL	tr\|A0A068UM35\|A0A068UM35_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09357.1}
TAIR10	AT3G60160.1	0	multidrug resistance-associated protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54741239	54748873	-
GWHAAZE00000009	mRNA	54741239	54748873	-
GWHAAZE00000009	exon	54746762	54748873	-
GWHAAZE00000009	exon	54746594	54746680	-
GWHAAZE00000009	exon	54745612	54746259	-
GWHAAZE00000009	exon	54744682	54744846	-
GWHAAZE00000009	exon	54744163	54744457	-
GWHAAZE00000009	exon	54743171	54743385	-
GWHAAZE00000009	exon	54742642	54742947	-
GWHAAZE00000009	exon	54741853	54741916	-
GWHAAZE00000009	exon	54741538	54741777	-
GWHAAZE00000009	exon	54741239	54741366	-
GWHAAZE00000009	CDS	54746762	54748873	-
GWHAAZE00000009	CDS	54746594	54746680	-
GWHAAZE00000009	CDS	54745612	54746259	-
GWHAAZE00000009	CDS	54744682	54744846	-
GWHAAZE00000009	CDS	54744163	54744457	-
GWHAAZE00000009	CDS	54743171	54743385	-
GWHAAZE00000009	CDS	54742642	54742947	-
GWHAAZE00000009	CDS	54741853	54741916	-
GWHAAZE00000009	CDS	54741538	54741777	-
GWHAAZE00000009	CDS	54741239	54741366	-

Transcript Sequence
>GWHTAAZE031227 ATGTTCCTATTGACGCTGCAAACTAGAAGCGGGGCCCGATGCAGATCGACAGCCCAGATTCTTTCATCGGAGATCATGCAGGTTGTATCTTGGACCATCACATTGATCATGCTATACAAGTTTTCAAAGCAAAAGTACAACAAATTCCCTTGGATTTTGAGAACTTGGTGGCTTTGTACCTTCTTGCTCAGCCTCGCTCGCGCAACTCTCAATGCCAATTTCATAATCACAACCCAAGAAAGCCTCACATTACATGAATATGCTGATGTCCTTACCCTTCTAGCATCGACTTGCTTATTGGGTATCTCAATAAAAGGGAAAACAGGCATAGTCCTCAATATCCCAAACGGGGTCAGGGACCCGCTTCTCGACCCAAAACCCGAAAAGAATTTACGGGATTGCCCTTACGGAAAGGCCACTCTTCTCCAACTTGTTACATTTTCTTGGCTCAACCCGTTATTTGCGGTTGGGATCATGAAGCCCCTTGACCAAGATGAAGTCCCAAATGTCGACGTTAAGGACTCTGCAGAATTTCTATCCCATTCATTCGACGAAAGCTTAAAGAAAGTTAAGGAGAGTGAAGGGACTGAAAACCCATCTATCTATAAGGCTATATATGTGTTTGGGAGGAAAAAAGCGGCAATTAATGCGTTTTTTGCAGTTGTAAGCGCTATAGCATCGTATGTCGGTCCATATCTTATTAATGATCTTGTAGATTTTCTTAGCGAGAAGAAAACAAGGAGCTTAGGGAGTGGGTACTTACTTGCACTAGCCTTTCTTGGTGCAAAAATGGTTGAGACGGTGGCTCAAAGGCAGTGGGTCTTTGGGGCTCGACAGCTAGGCCTTCGGCTAAGAGCTGCTTTGATATCGCACATATACAAAAAGGGGCTCCGATTATCGAGCCAGTCCTGCCAAAGTCACACGAGCGGTGAGATCATAAATTACATGAGCGTCGACATTCAAAGAATCACAGACTTCATGTGGTACTTGAACATAATTTGGCAGCTGCCTATACAAATTTTCTTGGCCATATATATACTTCATATAAATCTTGGATTGGGATCTTTTGTGGGATTAGCGGCAACTTTGACAGTAATGGCGATTAACATACCAATTACTAGAGTTCAAAAAGGTTATCAGTCTAAGATTATGGAAGCTAAGGATGATAGAATGAAAGCCACTTCGGAGATTCTTCGAAATATGAAGACCCTCAAGCTTCAAGCATGGGACTGTCACTATCTTCAAAAGCTAGAGTTCTTGAGGAAAAATGAGTATAATTGGCTATGGAAGTCGCTTAGATTATCGGCCATATCGACTTTTATCTTTTGGGGATCGCCAACTTTCATTTCTGTGGCGACATTTGGCGGATGCGTGTTGATGGGGATTCCGTTAACTGCTGGGCGGGTTTTATCTGCTTTGGCTACATTTCGAATGTTACAAGATCCTATCTATAATTTACCAGACTTACTCTCCGTGGTTGCACAAGGGAAAGTGTCGGCGGATAGAGTTGCTTCTTACCTCCAAGAAGACGAAATTCGGGTAGACGCAGTCGAGTTTTTTCCTAGGGACCAAACGGAATTTGACATTGAGATTCAAGACGGAAAGTTCAGCTGGGAACCTGAAAAAGAAAATCCAACTCTCAATGGAATAGAGCTGAAAGTGAAGAGGGGGATGAAGGTGGCGATATGTGGAACCGTTGGATCGGGTAAGTCTAGTCTTTTATCGTGCATATTAGGGGAGGTGCCTAAGTTATCAGGAGGGGTGAAGATCAGTGGCACAAAGGCTTACGTTCCTCAGTCGCCGTGGATACTGACGGGGAACGTCAGAGAGAATATTCTCTTTGGGAATAGTTTTGATGGTGCCAAGTACAACAGAACAATCAAAGCATGTGCTTTGGTGAAGGATTTTGAGCTGTTCTCTACAGGAGATCTAACAGAGATCGGTGAAAGGGGTATAAATATGAGTGGAGGACAGAAGCAGAGGATACAAATCGCTCGTGCAGTGTATCAAGATGCAGATATTTATCTTCTTGATGATCCTTTTAGTGCCGTAGATGCTCATACAGGCACCCAACTCTTTGAGGTTGGAATTTATAGTTTAGCTGTTTTCAAGGATTGCCTTATGGGGATTCTTAAAGGCAAGACCATAGTATATGTTACTCACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTTATGCAAAATGGAAGAATCGCGCAAGCCGGTACATTCCAGGAACTTATGAAACAAAATATCGGATTTGAACTTCTAGTTGGAGCTCATAGCCAAGCTCTAGAATCGGTCCAAACAGTAGAAAACTCGAGTCGATCAACCAAACAAACACCACCCAATGCTGAATTGAACACCGAACCCAATTCAAACACAGAATTTCCGCACACTAAACAGGATTCAGAACACAATCTATGCGTAGAGATAACAGAAAAAGATGGTAAACTAGTGAACGACGAAGAGAGAGAAAAGGGAAGCATTGGGAAAGAAGTGTACTGGTCTTACTTGACTATAGTGAAAGGGGGCGCCTTAGTTCCAATCATACTTCTGGCTCAGTCGTCATTTCAGGTGTTACAGGTGGCGAGCAACTATTGGATGGCGTGGGCGTGTCCAACGGATGATGCTGAGGCAATAACAGGGATGGATTTCGTATTGTTTGTTTATATGCTCTTTGCGTTTGGGAGTTCTCTTTGTGTTTTGGTCCGAGCTATGCTTGTGGCTATAATGGGCCTTTCGACAGCTCAAAAGCTCTTTGATAATATGCTCCGCAGCATCCTTCGAGCTCCTATGGCATTCTTTGATTCCACCCCAGCTGGAAGAATCTTAAATCGGGCATCAACAGACCAAACTGTACTAGATTTGGAGATAGCAAACAAAGTGGGTTGGTGTGCTTTCTCGATAATTCAGATTCTGGGGACGATAGTCGTAATGTCACAGGTAGCATGGGAAGTGTTCCTCATCTTCATTCCAGTCACAGCCATCTGCATTTGGTACCAACGATATTACATACCAACTGCAAGAGAACTGGCCCGCCTAGCAGGAATACAAAGAGCTCCAATTCTCCACCACTTTGCAGAATCATTATCGGGAGCAGCAACGATCCGGGCCTTTGATCAAAAAGACCGTTTCACTGATGCAAACCTCTGCCTCATTGACAATCACTCAAGGCCTTGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTTAGACTCAACCAGTTGTCCAACTTTGTATTTGCCTTCTCTCTTGTTTTGCTCATCTCCCTCCCTGACGGGATAATTATTCCAAGTATTGCAGGGTTGGCAGTAACATACGGAATTAATTTGAATGTTCTACAAGCTGCAGTTATATGGAACATATGCAATGCAGAGAACAAGATGATATCAGTTGAAAGGATACTTCAGTACTCAAATATTAACAGTGAAGCACCTCTGATGATTGAAGATAGCAGACCACCAGATAACTGGCCAGATACAGGGACAATTACTTTCACAAATTTGCAGATTCGTTATGCTGAGCATTTACCATCTGTATTGAAAAACATCACCTGCACATTTCCGGGAAGAAAGAAAGTTGGTGTGGTAGGAAGGACAGGGAGCGGCAAATCAACCCTCATACAGGCCATCTTTCGGGTAGTAGAGCCAAGAGAAGGAAGCATTATAATCGACGGCGTAGATATATCCAAGATTGGACTTCGCGATCTGAGATCAAGGCTTAGCATCATTCCACAGGATCCCACTATGTTTGAAGGAACTGTTAGAGGAAATCTTGACCCGCTAGAGCAATACTCTGACGGTGAAATTTGGGAGGCTCTACATAAATGTCAACTGGGTGATGTAGTAAGAGCGAAGGAAGAGAAACTAGAATACACAGTGGTTGAAAATGGAGAAAACTGGAGTGTGGGGCAAAGGCAGTTGTTCTGTCTTGGAAGAGCCTTGCTAAAGAAAAGCAGCATTCTTGTTCTAGATGAAGCGACGGCATCCGTTGATTCTGCAACCGATGGAGTGATACAAAATATCATTAGCCACGAGTTTAAAGATCGAACCATTGTCACCATAGCTCACAGAATCCACACTATTATCGATAGCGATCTTGTTTTAGTTCTTAGTGAAGGAAGAATTGCGGAGTATGATAAGCCAGCAAGGTTGCTAGAAAGAGAGGATTCGTTCTTCTCAAAGCTCATAAAAGAGTACTCCATGAGATCACAAAGCTTCAACAATTTGGAAGATTTACAAAATTGA

Network for GWHGAAZE031193

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	215	481	1.00E-30
PF00005.28	ABC_tran	547	681	1.50E-18
PF00664.24	ABC_membrane	864	1093	5.70E-31
PF00005.28	ABC_tran	1185	1333	1.60E-29

Protein Sequence

>GWHPAAZE031211
MFLLTLQTRSGARCRSTAQILSSEIMQVVSWTITLIMLYKFSKQKYNKFPWILRTWWLCTFLLSLARATLNANFIITTQESLTLHEYADVLTLLASTCLLGISIKGKTGIVLNIPNGVRDPLLDPKPEKNLRDCPYGKATLLQLVTFSWLNPLFAVGIMKPLDQDEVPNVDVKDSAEFLSHSFDESLKKVKESEGTENPSIYKAIYVFGRKKAAINAFFAVVSAIASYVGPYLINDLVDFLSEKKTRSLGSGYLLALAFLGAKMVETVAQRQWVFGARQLGLRLRAALISHIYKKGLRLSSQSCQSHTSGEIINYMSVDIQRITDFMWYLNIIWQLPIQIFLAIYILHINLGLGSFVGLAATLTVMAINIPITRVQKGYQSKIMEAKDDRMKATSEILRNMKTLKLQAWDCHYLQKLEFLRKNEYNWLWKSLRLSAISTFIFWGSPTFISVATFGGCVLMGIPLTAGRVLSALATFRMLQDPIYNLPDLLSVVAQGKVSADRVASYLQEDEIRVDAVEFFPRDQTEFDIEIQDGKFSWEPEKENPTLNGIELKVKRGMKVAICGTVGSGKSSLLSCILGEVPKLSGGVKISGTKAYVPQSPWILTGNVRENILFGNSFDGAKYNRTIKACALVKDFELFSTGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFEVGIYSLAVFKDCLMGILKGKTIVYVTHQVEFLPAADLILVMQNGRIAQAGTFQELMKQNIGFELLVGAHSQALESVQTVENSSRSTKQTPPNAELNTEPNSNTEFPHTKQDSEHNLCVEITEKDGKLVNDEEREKGSIGKEVYWSYLTIVKGGALVPIILLAQSSFQVLQVASNYWMAWACPTDDAEAITGMDFVLFVYMLFAFGSSLCVLVRAMLVAIMGLSTAQKLFDNMLRSILRAPMAFFDSTPAGRILNRASTDQTVLDLEIANKVGWCAFSIIQILGTIVVMSQVAWEVFLIFIPVTAICIWYQRYYIPTARELARLAGIQRAPILHHFAESLSGAATIRAFDQKDRFTDANLCLIDNHSRPWFHNVSAMEWLSFRLNQLSNFVFAFSLVLLISLPDGIIIPSIAGLAVTYGINLNVLQAAVIWNICNAENKMISVERILQYSNINSEAPLMIEDSRPPDNWPDTGTITFTNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRVVEPREGSIIIDGVDISKIGLRDLRSRLSIIPQDPTMFEGTVRGNLDPLEQYSDGEIWEALHKCQLGDVVRAKEEKLEYTVVENGENWSVGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQNIISHEFKDRTIVTIAHRIHTIIDSDLVLVLSEGRIAEYDKPARLLEREDSFFSKLIKEYSMRSQSFNNLEDLQN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05665	ABCC1	ABC transporters	map02010
		Sphingolipid signaling pathway	map04071
		Vitamin digestion and absorption	map04977

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.338
	SRR3591706	second leaf	0.850
	SRR3591707	mature leaf	0.438
	SRR3591708	Shoot apex	1.178
	SRR3591709	Stem	0.713
	SRR3591710	White floral bud	2.556
	SRR3591711	White flower	2.269
	SRR3591712	Green floral bud	2.544
	SRR3591713	Yellow flower	0.804
SRP173429	SRR8316895	Juvenile bud stage	1.414
	SRR8316896	Juvenile bud stage	1.739
	SRR8316897	Juvenile bud stage	2.036
	SRR8316894	Third green stage	1.185
	SRR8316900	Third green stage	2.362
	SRR8316901	Third green stage	2.020
	SRR8316898	Complete white stage	0.342
	SRR8316899	Complete white stage	1.294
	SRR8316903	Complete white stage	0.647
	SRR8316902	Silver flowering stage	0.328
	SRR8316904	Silver flowering stage	0.523
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.312
	SRR8316907	Gold flowering stage	0.530
	SRR8316908	Gold flowering stage	1.578
SRP132670	SRR6706286	Control	2.053
	SRR6706287	Light intensity 50%	1.931
	SRR6706288	Light intensity 20%	1.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.163
	CNS0095593	Slightly white alabastrum(diploid) 2	2.736
	CNS0095594	Slightly white alabastrum(diploid) 3	3.737
	CNS0095595	Whole white alabastrum(diploid) 2	3.438
	CNS0095596	Whole white alabastrum(diploid) 3	3.046
	CNS0095597	Whole white alabastrum(diploid) 4	5.568
	CNS0095598	Silvery flower (diploied) 1	1.365
	CNS0095599	Silvery flower (diploied) 2	1.212
	CNS0095600	Silvery flower (diploied) 3	0.913
	CNS0095601	Golden flower (diploid) 1	1.174
	CNS0095602	Golden flower (diploid) 2	0.982
	CNS0095603	Golden flower (diploid) 3	0.894
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.889
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.004
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.730
	CNS0095610	Silvery flower (tetraploid) 1	1.403
	CNS0095611	Silvery flower (tetraploid) 2	1.087
	CNS0095612	Silvery flower (tetraploid) 3	0.892
	CNS0095613	Golden flower (tetraploid) 1	0.569
	CNS0095614	Golden flower (tetraploid) 2	0.847
	CNS0095615	Golden flower (tetraploid) 3	0.184
CRA001975	CRR073297	Stem 1	2.322
	CRR073298	Stem 2	1.857
	CRR073299	Stem 3	0.380
	CRR073300	Leaf 1	2.114
	CRR073301	Leaf 2	2.143
	CRR073302	Leaf 3	0.794
	CRR073303	Juvenile bud 1	0.703
	CRR073304	Juvenile bud 2	0.382
	CRR073305	Juvenile bud 3	1.084
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.047
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.044
	CRR073310	Second white 2	0.222
	CRR073311	Second white 3	0.296
	CRR073312	Silver flowering 1	0.238
	CRR073313	Silver flowering 2	0.111
	CRR073314	Silver flowering 3	0.052
	CRR073315	Gold flowering 1	0.081
	CRR073316	Gold flowering 2	0.349
	CRR073317	Gold flowering 3	0.003
	CRR073318	Tawny withering 1	0.595
	CRR073319	Tawny withering 2	0.370
	CRR073320	Tawny withering 3	0.197