Detail information of GWHGAAZE031182


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW53999.10hypothetical protein EUGRSUZ_J03194, partial [Eucalyptus grandis]
COGNP_923861.11E-20serine/threonine kinase
Swissprottr|Q6R2K1|SRF5_ARATH0Protein STRUBBELIG-RECEPTOR FAMILY 5 (Precursor)
trEMBLtr|A0A059AJU0|A0A059AJU0_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW53999.1} (Fragment)
TAIR10AT1G78980.10STRUBBELIG-receptor family 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5439706454414746-
GWHAAZE00000009mRNA5439706454414746-
GWHAAZE00000009exon5439706454397186-
GWHAAZE00000009exon5439819154398347-
GWHAAZE00000009exon5439844254398578-
GWHAAZE00000009exon5440023254400352-
GWHAAZE00000009exon5440076954401040-
GWHAAZE00000009exon5440320154403466-
GWHAAZE00000009exon5440459054404891-
GWHAAZE00000009exon5440497654405041-
GWHAAZE00000009exon5440668154406746-
GWHAAZE00000009exon5440682754406898-
GWHAAZE00000009exon5441257054412641-
GWHAAZE00000009exon5441271454412785-
GWHAAZE00000009exon5441364154413706-
GWHAAZE00000009exon5441383454413908-
GWHAAZE00000009exon5441402954414161-
GWHAAZE00000009exon5441458054414746-
GWHAAZE00000009five_prime_UTR5441471054414746-
GWHAAZE00000009CDS5441458054414709-
GWHAAZE00000009CDS5441402954414161-
GWHAAZE00000009CDS5441383454413908-
GWHAAZE00000009CDS5441364154413706-
GWHAAZE00000009CDS5441271454412785-
GWHAAZE00000009CDS5441257054412641-
GWHAAZE00000009CDS5440682754406898-
GWHAAZE00000009CDS5440668154406746-
GWHAAZE00000009CDS5440497654405041-
GWHAAZE00000009CDS5440459054404891-
GWHAAZE00000009CDS5440320154403466-
GWHAAZE00000009CDS5440076954401040-
GWHAAZE00000009CDS5440023254400352-
GWHAAZE00000009CDS5439844254398578-
GWHAAZE00000009CDS5439819154398347-
GWHAAZE00000009CDS5439706454397186-
Transcript Sequence

Network for GWHGAAZE031182

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_241816.10E-09
PF13855.7LRR_81301892.40E-09
PF07714.18PK_Tyr_Ser-Thr4206854.10E-40
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-V

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005515molecular_functionprotein binding
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.346
SRR3591707mature leaf0.294
SRR3591708Shoot apex0.899
SRR3591709Stem0.061
SRR3591710White floral bud7.805
SRR3591711White flower3.002
SRR3591712Green floral bud25.007
SRR3591713Yellow flower4.209
SRP173429 SRR8316895Juvenile bud stage 3.016
SRR8316896Juvenile bud stage 10.743
SRR8316897Juvenile bud stage 8.167
SRR8316894Third green stage 5.494
SRR8316900Third green stage 16.247
SRR8316901Third green stage 16.420
SRR8316898Complete white stage 0.092
SRR8316899Complete white stage 0.748
SRR8316903Complete white stage 0.245
SRR8316902Silver flowering stage0.594
SRR8316904Silver flowering stage0.503
SRR8316905Silver flowering stage0.198
SRR8316906Gold flowering stage 0.642
SRR8316907Gold flowering stage 0.907
SRR8316908Gold flowering stage 0.144
SRP132670SRR6706286Control7.819
SRR6706287Light intensity 50%6.979
SRR6706288Light intensity 20%6.520
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.417
CNS0095593Slightly white alabastrum(diploid) 29.105
CNS0095594Slightly white alabastrum(diploid) 314.053
CNS0095595Whole white alabastrum(diploid) 222.293
CNS0095596Whole white alabastrum(diploid) 327.544
CNS0095597Whole white alabastrum(diploid) 425.781
CNS0095598Silvery flower (diploied) 10.786
CNS0095599Silvery flower (diploied) 20.730
CNS0095600Silvery flower (diploied) 30.733
CNS0095601Golden flower (diploid) 10.570
CNS0095602Golden flower (diploid) 20.920
CNS0095603Golden flower (diploid) 30.573
CNS0095604Slightly white alabastrum(tetraploid) 121.831
CNS0095605Slightly white alabastrum(tetraploid) 221.879
CNS0095606Slightly white alabastrum(tetraploid) 30.826
CNS0095607Whole white alabastrum(tetraploid) 141.285
CNS0095608Whole white alabastrum(tetraploid) 248.743
CNS0095609Whole white alabastrum(tetraploid) 323.256
CNS0095610Silvery flower (tetraploid) 10.405
CNS0095611Silvery flower (tetraploid) 20.712
CNS0095612Silvery flower (tetraploid) 30.815
CNS0095613Golden flower (tetraploid) 10.517
CNS0095614Golden flower (tetraploid) 20.630
CNS0095615Golden flower (tetraploid) 31.393
CRA001975CRR073297Stem 13.471
CRR073298Stem 24.998
CRR073299Stem 31.956
CRR073300Leaf 114.555
CRR073301Leaf 29.709
CRR073302Leaf 34.181
CRR073303Juvenile bud 19.152
CRR073304Juvenile bud 25.672
CRR073305Juvenile bud 30.610
CRR073306Third green 10.783
CRR073307Third green 21.238
CRR073308Third green 31.042
CRR073309Second white 10.105
CRR073310Second white 20.264
CRR073311Second white 30.687
CRR073312Silver flowering 11.187
CRR073313Silver flowering 21.349
CRR073314Silver flowering 31.173
CRR073315Gold flowering 12.066
CRR073316Gold flowering 22.996
CRR073317Gold flowering 30.824
CRR073318Tawny withering 10.922
CRR073319Tawny withering 20.990
CRR073320Tawny withering 31.030