Detail information of GWHGAAZE031181


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010259402.10PREDICTED: histidine--tRNA ligase isoform X1 [Nelumbo nucifera]
COGYP_003318736.17E-55histidyl-tRNA synthetase
Swissprottr|P93422|SYH_ORYSJ6E-169Histidine--tRNA ligase
trEMBLtr|A0A022Q1R4|A0A022Q1R4_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU22532.1}
TAIR10AT3G02760.13E-141Class II aaRS and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5437158854381100-
GWHAAZE00000009mRNA5437158854381100-
GWHAAZE00000009exon5437158854371902-
GWHAAZE00000009exon5437206954372209-
GWHAAZE00000009exon5437253354372580-
GWHAAZE00000009exon5437284854373129-
GWHAAZE00000009exon5437415454374288-
GWHAAZE00000009exon5437439154374510-
GWHAAZE00000009exon5437535854375615-
GWHAAZE00000009exon5437610754376278-
GWHAAZE00000009exon5437635854376495-
GWHAAZE00000009exon5437670954376839-
GWHAAZE00000009exon5437830654378424-
GWHAAZE00000009exon5437850954378569-
GWHAAZE00000009exon5437972454381100-
GWHAAZE00000009CDS5437972454381100-
GWHAAZE00000009CDS5437850954378569-
GWHAAZE00000009CDS5437830654378424-
GWHAAZE00000009CDS5437670954376839-
GWHAAZE00000009CDS5437635854376495-
GWHAAZE00000009CDS5437610754376278-
GWHAAZE00000009CDS5437535854375615-
GWHAAZE00000009CDS5437439154374510-
GWHAAZE00000009CDS5437415454374288-
GWHAAZE00000009CDS5437284854373129-
GWHAAZE00000009CDS5437253354372580-
GWHAAZE00000009CDS5437206954372209-
GWHAAZE00000009CDS5437158854371902-
Transcript Sequence

Network for GWHGAAZE031181

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13393.7tRNA-synt_His7879812.00E-18
PF03129.21HGTP_anticodon101510907.40E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01892HARS, hisS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.356
SRR3591706second leaf20.704
SRR3591707mature leaf19.100
SRR3591708Shoot apex40.363
SRR3591709Stem29.948
SRR3591710White floral bud32.512
SRR3591711White flower45.778
SRR3591712Green floral bud40.399
SRR3591713Yellow flower31.167
SRP173429 SRR8316895Juvenile bud stage 23.922
SRR8316896Juvenile bud stage 32.676
SRR8316897Juvenile bud stage 15.687
SRR8316894Third green stage 13.847
SRR8316900Third green stage 43.818
SRR8316901Third green stage 37.568
SRR8316898Complete white stage 13.651
SRR8316899Complete white stage 43.620
SRR8316903Complete white stage 21.469
SRR8316902Silver flowering stage15.217
SRR8316904Silver flowering stage20.154
SRR8316905Silver flowering stage10.340
SRR8316906Gold flowering stage 34.155
SRR8316907Gold flowering stage 36.617
SRR8316908Gold flowering stage 36.868
SRP132670SRR6706286Control43.448
SRR6706287Light intensity 50%43.186
SRR6706288Light intensity 20%45.693
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.485
CNS0095593Slightly white alabastrum(diploid) 226.468
CNS0095594Slightly white alabastrum(diploid) 321.483
CNS0095595Whole white alabastrum(diploid) 225.140
CNS0095596Whole white alabastrum(diploid) 324.990
CNS0095597Whole white alabastrum(diploid) 420.991
CNS0095598Silvery flower (diploied) 129.004
CNS0095599Silvery flower (diploied) 223.786
CNS0095600Silvery flower (diploied) 340.055
CNS0095601Golden flower (diploid) 125.777
CNS0095602Golden flower (diploid) 238.798
CNS0095603Golden flower (diploid) 337.969
CNS0095604Slightly white alabastrum(tetraploid) 128.407
CNS0095605Slightly white alabastrum(tetraploid) 224.808
CNS0095606Slightly white alabastrum(tetraploid) 351.871
CNS0095607Whole white alabastrum(tetraploid) 117.870
CNS0095608Whole white alabastrum(tetraploid) 215.607
CNS0095609Whole white alabastrum(tetraploid) 338.270
CNS0095610Silvery flower (tetraploid) 139.767
CNS0095611Silvery flower (tetraploid) 249.181
CNS0095612Silvery flower (tetraploid) 336.325
CNS0095613Golden flower (tetraploid) 118.300
CNS0095614Golden flower (tetraploid) 234.122
CNS0095615Golden flower (tetraploid) 333.779
CRA001975CRR073297Stem 135.867
CRR073298Stem 237.877
CRR073299Stem 330.456
CRR073300Leaf 143.204
CRR073301Leaf 238.680
CRR073302Leaf 332.092
CRR073303Juvenile bud 131.513
CRR073304Juvenile bud 226.678
CRR073305Juvenile bud 344.271
CRR073306Third green 111.778
CRR073307Third green 29.698
CRR073308Third green 313.403
CRR073309Second white 116.373
CRR073310Second white 217.402
CRR073311Second white 319.308
CRR073312Silver flowering 113.028
CRR073313Silver flowering 214.326
CRR073314Silver flowering 311.211
CRR073315Gold flowering 112.725
CRR073316Gold flowering 220.157
CRR073317Gold flowering 312.479
CRR073318Tawny withering 122.919
CRR073319Tawny withering 216.352
CRR073320Tawny withering 321.900