Gene detail

Detail information of GWHGAAZE031180

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97732.1	0	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	2E-14	hypothetical protein Aasi_1443
Swissprot	tr\|C0LGU0\|RLK_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase RLK (Precursor)
trEMBL	tr\|A0A068TP08\|A0A068TP08_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97732.1}
TAIR10	AT5G35390.1	2E-163	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54362571	54365135	-
GWHAAZE00000009	mRNA	54362571	54365135	-
GWHAAZE00000009	exon	54364373	54365135	-
GWHAAZE00000009	exon	54363344	54364039	-
GWHAAZE00000009	exon	54362571	54363211	-
GWHAAZE00000009	CDS	54364373	54365135	-
GWHAAZE00000009	CDS	54363344	54364039	-
GWHAAZE00000009	CDS	54362571	54363211	-

Transcript Sequence
>GWHTAAZE031214 ATGGTAATGGGCGCGCACAAAGCCCTCCTTGTGCGCCGCCCAACATCATTAAGACTAATTAATCTTGGGTTTCTCGATCTTTTCTTTCTTCTTCTTCTAGCATCCTCATTGTTATCGTCATCAGGTGGTGGCGGCGGCGTAGTAATAACAGCGGCAGCAGCAGAAGGTGGCGGGGACTCGTCCCTACAAGCCCTTTTAGATTTTAAAAGTTCATTATCAAATGCAGATGCACTTTCCGATTGGGACCCTTCCTCTAAAACAAGTCCATGTTCATCAGATCATGTCGGTGAAATTTGGACGGGTGTGCTGTGCTTTAATGGAAATGTATGGGGTTTGCAACTCGAAAACAAGGGCCTTAGGGGCGTGATAGACATTGATTCCCTGTTGCCCTTGCCCCAATTGCGGACCCTCAGCTTCATGGGCAATAACTTTGAAGGTCCCCTACCTGATTTCAGAAAACTCGGTGCGTTGAAGTCCTTGTTTCTCTCCAACAACCATTTCTCTGGTGATATTCCGGATGATGCTTTCATGGGCATGTCCTATCTCAAGAAAGTCTACATGGCCAACAACAAGTTTACGGGAAAGATTCCGACTTCCCTCGCCAAATCTCCCAGGCTTTTAGAGTTGACGCTCGAGAATAATCAATTCATCGGTCCCATTCCAGATTTTCCCCCTGATCTCAAACTCATAAATGTATCCAACAATCAATTGGAGGGTCCAATCCCTCCATCTCTAACTGACATGGATGCTAACTCGTTTTCTGGCAACAAAGAATTGTGTGGGAAGCCTTTGGAGTCAAAATGCGAGACCTCTCCGCCGTCCATTAGTCCTCCAGACGTGACTAGCAACAATTCTCCCCCACCTGCTGGTGAAACAGAGGAGGAGGAGAAGCCATCAGCTCTACGAATGGTGGTGATCGTGACAGCTGGTTTGGTTGCATTGGCTGCAATGGTTGTGATATTGATAGCATGCTGTCGCCGACTTGCGGGGGGCAGTAGTAGTAAACTATCAGGGCCACCATTATCAACTTCACAAAAAGGAGTGAAACGAGATCAGATGGGCAGCGGTGGTGTTGGTGCTGCGGGGACAGCTGGAATGAATACGAGGAGGAATATTAACAGTAGTGGTGGGGGTAAGGATCAACATGGGAGGTTGACATTCGTGAGGGAAGATAGACAGAGGTTTGAGCTACAAGACTTGCTTAGAGCATCGGCAGAAGTGTTGGGGAGTGGGAGCTTTGGGTCTTCTTACAAGGCAGTGTTGATGGACCCCGAGGGTCAGGCTGTGGTGGTCAAGAGGTTTAAGCAAATGAATAAAGTTGGTAGGGAAGACTTCCAAGAGCATATGAGAAGACTTGGCAGGCTCAGTCACCCCAACCTCCTCCCTATTGTCGCCTACTACTACCGCAAAGAAGAGAAGCTCCTTGTTTTTGACTTTATCCCTAACGGCAGCTTAGCTAGGAACCATAACGCTGAGCAGCCAGGGCTTGATTGGCCAACCCGCTTGAAAATAATAAAAGGAGTGGCCAAGGGATTGGCTTACCTCCACAGCGAGCTCCCAAGCCTAAATGTACCCCACGGTCACCTTAAATCATCAAATGTGCTTCTGGATAAGTCCTATGAGCCGCTCTTAATGGATTATGCTCTAGTGCCGGTGGTGAACCCGGAACAAGCCCAACAGCTTATGGTGGCTTACAAATCACCCGAATATTGCCTACAGTCCCACACAACCAAAAAGACCGATGTTTGGAGTCTAGGAATACTGATACTAGAGACATTGACAGGTAAGTTTCCATCCAATTACCTGGCCAAAACTAGCACTGCTGCTACCACTGCTCCTGCTGCAGATCATTTATCCAATAGTAGCAGCAACTGGGTGAAGTCCATTGTTCCTAATATATCAGAAGTAGAAGTAGAAGAAGTAGTACAGCAAGTTTTTGATAAAGAAATGGGAAGGAGAACCGAGAACGCTCATGGAGAAATGTTAAAGCTCTTGAGGATTGGAGTGGCTTGCTGTGAAGACGATTTGGAAACAAGGTTGGATTTGAAAGAAGCCGTTGACAGAATTGATTTGATCAATGAGAGGGATCACCCAATGTAA

Network for GWHGAAZE031180

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	60	104	1.60E-08
PF13855.7	LRR_8	157	216	2.10E-09
PF00069.26	Pkinase	405	653	1.80E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.158
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.044
	SRR3591709	Stem	0.462
	SRR3591710	White floral bud	102.174
	SRR3591711	White flower	5.991
	SRR3591712	Green floral bud	79.747
	SRR3591713	Yellow flower	4.181
SRP173429	SRR8316895	Juvenile bud stage	7.072
	SRR8316896	Juvenile bud stage	27.295
	SRR8316897	Juvenile bud stage	13.597
	SRR8316894	Third green stage	10.484
	SRR8316900	Third green stage	53.783
	SRR8316901	Third green stage	51.110
	SRR8316898	Complete white stage	0.036
	SRR8316899	Complete white stage	0.489
	SRR8316903	Complete white stage	0.144
	SRR8316902	Silver flowering stage	1.157
	SRR8316904	Silver flowering stage	3.464
	SRR8316905	Silver flowering stage	0.767
	SRR8316906	Gold flowering stage	0.401
	SRR8316907	Gold flowering stage	0.055
	SRR8316908	Gold flowering stage	0.196
SRP132670	SRR6706286	Control	34.132
	SRR6706287	Light intensity 50%	35.445
	SRR6706288	Light intensity 20%	28.198
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.538
	CNS0095593	Slightly white alabastrum(diploid) 2	43.873
	CNS0095594	Slightly white alabastrum(diploid) 3	63.232
	CNS0095595	Whole white alabastrum(diploid) 2	128.417
	CNS0095596	Whole white alabastrum(diploid) 3	150.977
	CNS0095597	Whole white alabastrum(diploid) 4	159.941
	CNS0095598	Silvery flower (diploied) 1	5.229
	CNS0095599	Silvery flower (diploied) 2	20.885
	CNS0095600	Silvery flower (diploied) 3	3.913
	CNS0095601	Golden flower (diploid) 1	6.181
	CNS0095602	Golden flower (diploid) 2	2.872
	CNS0095603	Golden flower (diploid) 3	3.098
	CNS0095604	Slightly white alabastrum(tetraploid) 1	97.792
	CNS0095605	Slightly white alabastrum(tetraploid) 2	110.282
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	165.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	199.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	92.214
	CNS0095610	Silvery flower (tetraploid) 1	2.586
	CNS0095611	Silvery flower (tetraploid) 2	9.567
	CNS0095612	Silvery flower (tetraploid) 3	28.012
	CNS0095613	Golden flower (tetraploid) 1	3.653
	CNS0095614	Golden flower (tetraploid) 2	0.821
	CNS0095615	Golden flower (tetraploid) 3	11.080
CRA001975	CRR073297	Stem 1	16.447
	CRR073298	Stem 2	17.230
	CRR073299	Stem 3	10.369
	CRR073300	Leaf 1	64.886
	CRR073301	Leaf 2	45.510
	CRR073302	Leaf 3	21.148
	CRR073303	Juvenile bud 1	55.122
	CRR073304	Juvenile bud 2	41.761
	CRR073305	Juvenile bud 3	6.305
	CRR073306	Third green 1	28.076
	CRR073307	Third green 2	31.665
	CRR073308	Third green 3	27.777
	CRR073309	Second white 1	1.200
	CRR073310	Second white 2	4.381
	CRR073311	Second white 3	6.399
	CRR073312	Silver flowering 1	32.037
	CRR073313	Silver flowering 2	32.986
	CRR073314	Silver flowering 3	18.032
	CRR073315	Gold flowering 1	25.767
	CRR073316	Gold flowering 2	6.463
	CRR073317	Gold flowering 3	8.014
	CRR073318	Tawny withering 1	30.854
	CRR073319	Tawny withering 2	24.069
	CRR073320	Tawny withering 3	25.412