Detail information of GWHGAAZE031164


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007142125.10hypothetical protein PHAVU_008G254800g [Phaseolus vulgaris]
COGYP_005373993.12E-39cation diffusionfacilitator family transporter
Swissprottr|Q9C512|MNS1_ARATH0Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1
trEMBLtr|V7B8F8|V7B8F8_PHAVU0alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193}
TAIR10AT1G51590.13E-168alpha-mannosidase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5415106254169854-
GWHAAZE00000009mRNA5415106254169854-
GWHAAZE00000009exon5415106254151631-
GWHAAZE00000009exon5415235154152411-
GWHAAZE00000009exon5415279154152889-
GWHAAZE00000009exon5415355754153663-
GWHAAZE00000009exon5415373554153775-
GWHAAZE00000009exon5415454154154618-
GWHAAZE00000009exon5415497954155082-
GWHAAZE00000009exon5415514554155264-
GWHAAZE00000009exon5415601654156134-
GWHAAZE00000009exon5415624754156304-
GWHAAZE00000009exon5415642254156536-
GWHAAZE00000009exon5415701854157073-
GWHAAZE00000009exon5415720054157332-
GWHAAZE00000009exon5415856854158619-
GWHAAZE00000009exon5416063854160875-
GWHAAZE00000009exon5416205554162225-
GWHAAZE00000009exon5416230454162384-
GWHAAZE00000009exon5416251054162579-
GWHAAZE00000009exon5416268754162714-
GWHAAZE00000009exon5416298954163097-
GWHAAZE00000009exon5416343454163532-
GWHAAZE00000009exon5416362254163730-
GWHAAZE00000009exon5416389654163961-
GWHAAZE00000009exon5416407754164201-
GWHAAZE00000009exon5416444754164536-
GWHAAZE00000009exon5416525054165421-
GWHAAZE00000009exon5416558654165651-
GWHAAZE00000009exon5416644054166552-
GWHAAZE00000009exon5416823654168406-
GWHAAZE00000009exon5416887854168976-
GWHAAZE00000009exon5416981654169854-
GWHAAZE00000009CDS5416981654169854-
GWHAAZE00000009CDS5416887854168976-
GWHAAZE00000009CDS5416823654168406-
GWHAAZE00000009CDS5416644054166552-
GWHAAZE00000009CDS5416558654165651-
GWHAAZE00000009CDS5416525054165421-
GWHAAZE00000009CDS5416444754164536-
GWHAAZE00000009CDS5416407754164201-
GWHAAZE00000009CDS5416389654163961-
GWHAAZE00000009CDS5416362254163730-
GWHAAZE00000009CDS5416343454163532-
GWHAAZE00000009CDS5416298954163097-
GWHAAZE00000009CDS5416268754162714-
GWHAAZE00000009CDS5416251054162579-
GWHAAZE00000009CDS5416230454162384-
GWHAAZE00000009CDS5416205554162225-
GWHAAZE00000009CDS5416063854160875-
GWHAAZE00000009CDS5415856854158619-
GWHAAZE00000009CDS5415720054157332-
GWHAAZE00000009CDS5415701854157073-
GWHAAZE00000009CDS5415642254156536-
GWHAAZE00000009CDS5415624754156304-
GWHAAZE00000009CDS5415601654156134-
GWHAAZE00000009CDS5415514554155264-
GWHAAZE00000009CDS5415497954155082-
GWHAAZE00000009CDS5415454154154618-
GWHAAZE00000009CDS5415373554153775-
GWHAAZE00000009CDS5415355754153663-
GWHAAZE00000009CDS5415279154152889-
GWHAAZE00000009CDS5415235154152411-
GWHAAZE00000009CDS5415151954151631-
GWHAAZE00000009three_prime_UTR5415106254151518-
Transcript Sequence

Network for GWHGAAZE031164

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01532.21Glyco_hydro_47843852.80E-97
PF01532.21Glyco_hydro_474525841.20E-50
PF01545.22Cation_efflux6398316.30E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01230MAN1A_C, MNS1_2 Metabolic pathways map01100
N-Glycan biosynthesismap00510
Various types of N-glycan biosynthesismap00513
Protein processing in endoplasmic reticulummap04141

Gene Ontology

GO term OntologyName
GO:0006812biological_processcation transport
GO:0055085biological_processtransmembrane transport
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral component of membrane
GO:0004571molecular_functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509molecular_functioncalcium ion binding
GO:0008324molecular_functioncation transmembrane transporter activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.544
SRR3591706second leaf16.984
SRR3591707mature leaf19.313
SRR3591708Shoot apex24.053
SRR3591709Stem37.121
SRR3591710White floral bud32.381
SRR3591711White flower41.464
SRR3591712Green floral bud33.443
SRR3591713Yellow flower35.546
SRP173429 SRR8316895Juvenile bud stage 20.054
SRR8316896Juvenile bud stage 27.462
SRR8316897Juvenile bud stage 19.331
SRR8316894Third green stage 11.395
SRR8316900Third green stage 26.982
SRR8316901Third green stage 26.559
SRR8316898Complete white stage 12.646
SRR8316899Complete white stage 40.618
SRR8316903Complete white stage 20.432
SRR8316902Silver flowering stage15.090
SRR8316904Silver flowering stage19.381
SRR8316905Silver flowering stage8.639
SRR8316906Gold flowering stage 30.555
SRR8316907Gold flowering stage 30.146
SRR8316908Gold flowering stage 41.613
SRP132670SRR6706286Control24.283
SRR6706287Light intensity 50%25.784
SRR6706288Light intensity 20%26.597
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.549
CNS0095593Slightly white alabastrum(diploid) 226.826
CNS0095594Slightly white alabastrum(diploid) 322.802
CNS0095595Whole white alabastrum(diploid) 220.843
CNS0095596Whole white alabastrum(diploid) 317.856
CNS0095597Whole white alabastrum(diploid) 419.482
CNS0095598Silvery flower (diploied) 125.356
CNS0095599Silvery flower (diploied) 222.735
CNS0095600Silvery flower (diploied) 334.627
CNS0095601Golden flower (diploid) 123.162
CNS0095602Golden flower (diploid) 233.279
CNS0095603Golden flower (diploid) 334.170
CNS0095604Slightly white alabastrum(tetraploid) 131.546
CNS0095605Slightly white alabastrum(tetraploid) 230.270
CNS0095606Slightly white alabastrum(tetraploid) 342.812
CNS0095607Whole white alabastrum(tetraploid) 123.910
CNS0095608Whole white alabastrum(tetraploid) 221.690
CNS0095609Whole white alabastrum(tetraploid) 332.219
CNS0095610Silvery flower (tetraploid) 143.942
CNS0095611Silvery flower (tetraploid) 236.302
CNS0095612Silvery flower (tetraploid) 331.068
CNS0095613Golden flower (tetraploid) 126.213
CNS0095614Golden flower (tetraploid) 235.971
CNS0095615Golden flower (tetraploid) 335.260
CRA001975CRR073297Stem 129.866
CRR073298Stem 226.471
CRR073299Stem 325.094
CRR073300Leaf 129.285
CRR073301Leaf 226.101
CRR073302Leaf 327.559
CRR073303Juvenile bud 125.587
CRR073304Juvenile bud 219.948
CRR073305Juvenile bud 332.077
CRR073306Third green 111.511
CRR073307Third green 29.894
CRR073308Third green 313.062
CRR073309Second white 114.384
CRR073310Second white 213.245
CRR073311Second white 311.976
CRR073312Silver flowering 112.709
CRR073313Silver flowering 214.050
CRR073314Silver flowering 311.992
CRR073315Gold flowering 113.553
CRR073316Gold flowering 221.305
CRR073317Gold flowering 310.915
CRR073318Tawny withering 127.886
CRR073319Tawny withering 232.921
CRR073320Tawny withering 325.013