Gene detail

Detail information of GWHGAAZE031153

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001275406.1	2.5507E-173	mitogen-activated protein kinase kinase [Solanum tuberosum]
COG	NP_441874.1	4E-28	serine/threonine protein kinase
Swissprot	tr\|Q8RXG3\|M2K5_ARATH	8E-164	Mitogen-activated protein kinase kinase 5
trEMBL	tr\|Q7XAC9\|Q7XAC9_SOLTU	1E-173	Mitogen-activated protein kinase kinase {ECO:0000313\|EMBL:BAC81698.1}
TAIR10	AT3G21220.1	4E-130	MAP kinase kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	54022237	54023097	-
GWHAAZE00000009	mRNA	54022237	54023097	-
GWHAAZE00000009	exon	54022237	54023097	-
GWHAAZE00000009	CDS	54022237	54023097	-

Transcript Sequence
>GWHTAAZE031187 CTCAACAGAATCGGCAGCGGCAGCGGTGGTACTGTCTACAAGGTCCTCCACCGCCCCACCCGCAAGCTCTACGCCCTCAAGGTCATCTACGGCAACCACGAGGACTCCGTCCGCCGCCAGATCTGCCGCGAGATCGAGATCCTCCGCGACGTTGACAACCTAAACGTGGTTAAGTGCCACGACATGTTCGATCATGCCGGCGAGATTCAGGTCCTCCTTGAATACATGGACGGCGGCTCCCTCGAGGGCCGCAGCATCCCCGACGAACCGTCCCTCTCCGATCTCACCCGCCAGATCCTCTCCGGCCTCTATTACCTCCACCGCCGCAAGATTGTCCACCGCGATATCAAGCCTTCCAACCTCTTGATCAATTCCCTAAAGCAGGTGAAGATTGCCGACTTCGGGGTTTCAAGAATCCTGGCCCAGACCATGGATCCATGCAATTCGTCTGTTGGTACAATTGCGTACATGAGTCCCGAAAGGATCAACACGGATCTGAATCACGGAAAGTACGATGGGTATGCGGGGGATATATGGAGCTTAGGGGTGAGTATCTTGGAGTTCTATTTAGGCAAGTTCCCTTTTGCCGTAGGTCGGCAGGGGGATTGGGCTAGCCTTATGTGCGCAATCTGCATGTCACAGCCTCCTCAAGCGCCACCCACCGCTTCCAGGGAGTTCAGGGACTTCATCGCCTGTTGTTTGCAGATGGATCCGGCCAGGAGATGGACAGCCGCCCAATTGTTGCGCCACCCTTTCATTTTGCAGAACACCGGCGGCAACAACAACCTCAGAAGTAGTAAGGTTCCACAGCCAAACCAAATGCTACCTCCTCCTCCCCGCCCCCATAATTCTTCTGCCTGA

Network for GWHGAAZE031153

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	2	253	1.20E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE7

KEGG pathway

KO	Enzyme	pathway	mapID
K13413	MKK4_5	MAPK signaling pathway - plant	map04016
		Plant hormone signal transduction	map04075
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.269
	SRR3591706	second leaf	22.346
	SRR3591707	mature leaf	22.515
	SRR3591708	Shoot apex	29.426
	SRR3591709	Stem	37.573
	SRR3591710	White floral bud	34.425
	SRR3591711	White flower	47.222
	SRR3591712	Green floral bud	36.713
	SRR3591713	Yellow flower	38.959
SRP173429	SRR8316895	Juvenile bud stage	18.800
	SRR8316896	Juvenile bud stage	27.092
	SRR8316897	Juvenile bud stage	11.814
	SRR8316894	Third green stage	8.577
	SRR8316900	Third green stage	23.852
	SRR8316901	Third green stage	28.121
	SRR8316898	Complete white stage	11.165
	SRR8316899	Complete white stage	27.176
	SRR8316903	Complete white stage	24.473
	SRR8316902	Silver flowering stage	12.822
	SRR8316904	Silver flowering stage	14.945
	SRR8316905	Silver flowering stage	6.424
	SRR8316906	Gold flowering stage	26.101
	SRR8316907	Gold flowering stage	28.586
	SRR8316908	Gold flowering stage	28.359
SRP132670	SRR6706286	Control	20.399
	SRR6706287	Light intensity 50%	19.282
	SRR6706288	Light intensity 20%	17.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.351
	CNS0095593	Slightly white alabastrum(diploid) 2	39.237
	CNS0095594	Slightly white alabastrum(diploid) 3	45.325
	CNS0095595	Whole white alabastrum(diploid) 2	37.995
	CNS0095596	Whole white alabastrum(diploid) 3	33.771
	CNS0095597	Whole white alabastrum(diploid) 4	35.544
	CNS0095598	Silvery flower (diploied) 1	42.868
	CNS0095599	Silvery flower (diploied) 2	29.087
	CNS0095600	Silvery flower (diploied) 3	42.906
	CNS0095601	Golden flower (diploid) 1	40.007
	CNS0095602	Golden flower (diploid) 2	58.660
	CNS0095603	Golden flower (diploid) 3	52.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.277
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.043
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.601
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.325
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.963
	CNS0095610	Silvery flower (tetraploid) 1	39.021
	CNS0095611	Silvery flower (tetraploid) 2	30.596
	CNS0095612	Silvery flower (tetraploid) 3	25.473
	CNS0095613	Golden flower (tetraploid) 1	35.064
	CNS0095614	Golden flower (tetraploid) 2	45.180
	CNS0095615	Golden flower (tetraploid) 3	38.219
CRA001975	CRR073297	Stem 1	40.809
	CRR073298	Stem 2	42.088
	CRR073299	Stem 3	49.986
	CRR073300	Leaf 1	46.434
	CRR073301	Leaf 2	44.136
	CRR073302	Leaf 3	28.565
	CRR073303	Juvenile bud 1	48.038
	CRR073304	Juvenile bud 2	42.859
	CRR073305	Juvenile bud 3	55.513
	CRR073306	Third green 1	50.426
	CRR073307	Third green 2	54.259
	CRR073308	Third green 3	50.719
	CRR073309	Second white 1	43.927
	CRR073310	Second white 2	24.222
	CRR073311	Second white 3	26.322
	CRR073312	Silver flowering 1	33.634
	CRR073313	Silver flowering 2	48.028
	CRR073314	Silver flowering 3	37.279
	CRR073315	Gold flowering 1	23.932
	CRR073316	Gold flowering 2	25.733
	CRR073317	Gold flowering 3	31.420
	CRR073318	Tawny withering 1	48.868
	CRR073319	Tawny withering 2	48.716
	CRR073320	Tawny withering 3	47.788