Detail information of GWHGAAZE031152


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009614020.10PREDICTED: tyrosine-sulfated glycopeptide receptor 1 [Nicotiana tomentosiformis]
COGYP_004775215.12E-40RHS repeat-associated core domain-containing protein
Swissprottr|Q9C7S5|PSYR1_ARATH0Tyrosine-sulfated glycopeptide receptor 1
trEMBLtr|M1AIW3|M1AIW3_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400023733}
TAIR10AT1G72300.10Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5400468454007884-
GWHAAZE00000009mRNA5400468454007884-
GWHAAZE00000009exon5400468454007884-
GWHAAZE00000009CDS5400468454007884-
Transcript Sequence

Network for GWHGAAZE031152

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_84525114.10E-10
PF00560.34LRR_16096310.0059
PF00069.26Pkinase78510536.60E-41
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-Xb-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE031152.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3024681012141618Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.384
SRR3591706second leaf4.571
SRR3591707mature leaf5.187
SRR3591708Shoot apex4.668
SRR3591709Stem10.961
SRR3591710White floral bud4.186
SRR3591711White flower5.743
SRR3591712Green floral bud2.860
SRR3591713Yellow flower4.074
SRP173429 SRR8316895Juvenile bud stage 2.745
SRR8316896Juvenile bud stage 3.921
SRR8316897Juvenile bud stage 1.050
SRR8316894Third green stage 2.098
SRR8316900Third green stage 4.781
SRR8316901Third green stage 5.074
SRR8316898Complete white stage 2.197
SRR8316899Complete white stage 5.993
SRR8316903Complete white stage 6.767
SRR8316902Silver flowering stage2.686
SRR8316904Silver flowering stage4.707
SRR8316905Silver flowering stage1.550
SRR8316906Gold flowering stage 5.275
SRR8316907Gold flowering stage 5.841
SRR8316908Gold flowering stage 5.572
SRP132670SRR6706286Control4.936
SRR6706287Light intensity 50%5.076
SRR6706288Light intensity 20%5.285
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.016
CNS0095593Slightly white alabastrum(diploid) 21.992
CNS0095594Slightly white alabastrum(diploid) 32.419
CNS0095595Whole white alabastrum(diploid) 22.044
CNS0095596Whole white alabastrum(diploid) 32.403
CNS0095597Whole white alabastrum(diploid) 42.455
CNS0095598Silvery flower (diploied) 14.899
CNS0095599Silvery flower (diploied) 22.718
CNS0095600Silvery flower (diploied) 36.252
CNS0095601Golden flower (diploid) 12.596
CNS0095602Golden flower (diploid) 25.172
CNS0095603Golden flower (diploid) 34.576
CNS0095604Slightly white alabastrum(tetraploid) 12.936
CNS0095605Slightly white alabastrum(tetraploid) 22.136
CNS0095606Slightly white alabastrum(tetraploid) 36.562
CNS0095607Whole white alabastrum(tetraploid) 12.628
CNS0095608Whole white alabastrum(tetraploid) 21.718
CNS0095609Whole white alabastrum(tetraploid) 33.413
CNS0095610Silvery flower (tetraploid) 14.072
CNS0095611Silvery flower (tetraploid) 24.573
CNS0095612Silvery flower (tetraploid) 32.115
CNS0095613Golden flower (tetraploid) 11.861
CNS0095614Golden flower (tetraploid) 23.851
CNS0095615Golden flower (tetraploid) 32.545
CRA001975CRR073297Stem 19.915
CRR073298Stem 210.558
CRR073299Stem 37.387
CRR073300Leaf 110.419
CRR073301Leaf 211.651
CRR073302Leaf 36.415
CRR073303Juvenile bud 19.382
CRR073304Juvenile bud 25.982
CRR073305Juvenile bud 316.503
CRR073306Third green 12.539
CRR073307Third green 23.620
CRR073308Third green 35.345
CRR073309Second white 12.636
CRR073310Second white 21.416
CRR073311Second white 31.734
CRR073312Silver flowering 11.498
CRR073313Silver flowering 22.025
CRR073314Silver flowering 31.728
CRR073315Gold flowering 17.213
CRR073316Gold flowering 210.616
CRR073317Gold flowering 39.612
CRR073318Tawny withering 18.950
CRR073319Tawny withering 27.792
CRR073320Tawny withering 38.625