Detail information of GWHGAAZE031149


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97777.10unnamed protein product [Coffea canephora]
COGYP_005517714.13E-18serine/threonine protein kinase with PASTA sensor(s)
Swissprottr|Q9LUL4|SRF7_ARATH0Protein STRUBBELIG-RECEPTOR FAMILY 7 (Precursor)
trEMBLtr|A0A068TP35|A0A068TP35_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97777.1}
TAIR10AT1G53730.13E-123STRUBBELIG-receptor family 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5394296853947989-
GWHAAZE00000009mRNA5394296853947989-
GWHAAZE00000009exon5394296853943069-
GWHAAZE00000009exon5394314853943304-
GWHAAZE00000009exon5394343453943570-
GWHAAZE00000009exon5394369853943830-
GWHAAZE00000009exon5394478253945044-
GWHAAZE00000009exon5394530053945583-
GWHAAZE00000009exon5394592653946323-
GWHAAZE00000009exon5394641953946481-
GWHAAZE00000009exon5394659353946658-
GWHAAZE00000009exon5394674053946811-
GWHAAZE00000009exon5394704753947118-
GWHAAZE00000009exon5394722353947294-
GWHAAZE00000009exon5394738353947448-
GWHAAZE00000009exon5394753453947605-
GWHAAZE00000009exon5394771553947847-
GWHAAZE00000009exon5394792953947989-
GWHAAZE00000009CDS5394792953947989-
GWHAAZE00000009CDS5394771553947847-
GWHAAZE00000009CDS5394753453947605-
GWHAAZE00000009CDS5394738353947448-
GWHAAZE00000009CDS5394722353947294-
GWHAAZE00000009CDS5394704753947118-
GWHAAZE00000009CDS5394674053946811-
GWHAAZE00000009CDS5394659353946658-
GWHAAZE00000009CDS5394641953946481-
GWHAAZE00000009CDS5394592653946323-
GWHAAZE00000009CDS5394530053945583-
GWHAAZE00000009CDS5394478253945044-
GWHAAZE00000009CDS5394369853943830-
GWHAAZE00000009CDS5394343453943570-
GWHAAZE00000009CDS5394314853943304-
GWHAAZE00000009CDS5394296853943069-
Transcript Sequence

Network for GWHGAAZE031149

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_222582.80E-07
PF13855.7LRR_81061656.90E-09
PF00069.26Pkinase4326971.10E-39
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-V

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.088
SRR3591706second leaf0.068
SRR3591707mature leaf0.193
SRR3591708Shoot apex0.039
SRR3591709Stem0.220
SRR3591710White floral bud19.788
SRR3591711White flower1.725
SRR3591712Green floral bud15.506
SRR3591713Yellow flower0.516
SRP173429 SRR8316895Juvenile bud stage 2.294
SRR8316896Juvenile bud stage 9.139
SRR8316897Juvenile bud stage 3.021
SRR8316894Third green stage 4.158
SRR8316900Third green stage 12.628
SRR8316901Third green stage 14.035
SRR8316898Complete white stage 0.076
SRR8316899Complete white stage 0.402
SRR8316903Complete white stage 0.074
SRR8316902Silver flowering stage0.425
SRR8316904Silver flowering stage0.438
SRR8316905Silver flowering stage0.097
SRR8316906Gold flowering stage 0.134
SRR8316907Gold flowering stage 0.179
SRR8316908Gold flowering stage 0.065
SRP132670SRR6706286Control4.291
SRR6706287Light intensity 50%4.697
SRR6706288Light intensity 20%3.722
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.771
CNS0095593Slightly white alabastrum(diploid) 27.993
CNS0095594Slightly white alabastrum(diploid) 312.661
CNS0095595Whole white alabastrum(diploid) 222.332
CNS0095596Whole white alabastrum(diploid) 328.532
CNS0095597Whole white alabastrum(diploid) 422.875
CNS0095598Silvery flower (diploied) 11.104
CNS0095599Silvery flower (diploied) 24.532
CNS0095600Silvery flower (diploied) 31.237
CNS0095601Golden flower (diploid) 11.393
CNS0095602Golden flower (diploid) 21.147
CNS0095603Golden flower (diploid) 31.203
CNS0095604Slightly white alabastrum(tetraploid) 119.615
CNS0095605Slightly white alabastrum(tetraploid) 218.470
CNS0095606Slightly white alabastrum(tetraploid) 32.089
CNS0095607Whole white alabastrum(tetraploid) 126.924
CNS0095608Whole white alabastrum(tetraploid) 230.457
CNS0095609Whole white alabastrum(tetraploid) 317.615
CNS0095610Silvery flower (tetraploid) 12.057
CNS0095611Silvery flower (tetraploid) 22.872
CNS0095612Silvery flower (tetraploid) 37.240
CNS0095613Golden flower (tetraploid) 11.545
CNS0095614Golden flower (tetraploid) 20.766
CNS0095615Golden flower (tetraploid) 33.944
CRA001975CRR073297Stem 12.982
CRR073298Stem 23.804
CRR073299Stem 32.335
CRR073300Leaf 19.041
CRR073301Leaf 29.041
CRR073302Leaf 34.137
CRR073303Juvenile bud 17.002
CRR073304Juvenile bud 26.996
CRR073305Juvenile bud 31.068
CRR073306Third green 14.553
CRR073307Third green 26.921
CRR073308Third green 35.322
CRR073309Second white 10.105
CRR073310Second white 21.008
CRR073311Second white 31.818
CRR073312Silver flowering 14.889
CRR073313Silver flowering 26.458
CRR073314Silver flowering 33.106
CRR073315Gold flowering 14.844
CRR073316Gold flowering 21.020
CRR073317Gold flowering 31.541
CRR073318Tawny withering 15.138
CRR073319Tawny withering 25.913
CRR073320Tawny withering 35.497