Gene detail

Detail information of GWHGAAZE031148

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG09629.1	0	26S protease regulatory subunit 7 [Gossypium arboreum]
COG	NP_070800.1	3E-115	proteasome-activating nucleotidase
Swissprot	tr\|Q9FXT9\|PRS7_ORYSJ	0	26S protease regulatory subunit 7
trEMBL	tr\|A0A059AS18\|A0A059AS18_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW56441.1}
TAIR10	AT1G53750.1	0	regulatory particle triple-A 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53937165	53942041	+
GWHAAZE00000009	mRNA	53937165	53942041	+
GWHAAZE00000009	exon	53937165	53937251	+
GWHAAZE00000009	exon	53938367	53938448	+
GWHAAZE00000009	exon	53939504	53939595	+
GWHAAZE00000009	exon	53939693	53939770	+
GWHAAZE00000009	exon	53940425	53940486	+
GWHAAZE00000009	exon	53940635	53940779	+
GWHAAZE00000009	exon	53940996	53941214	+
GWHAAZE00000009	exon	53941304	53941485	+
GWHAAZE00000009	exon	53941588	53941763	+
GWHAAZE00000009	exon	53941884	53942041	+
GWHAAZE00000009	CDS	53937165	53937251	+
GWHAAZE00000009	CDS	53938367	53938448	+
GWHAAZE00000009	CDS	53939504	53939595	+
GWHAAZE00000009	CDS	53939693	53939770	+
GWHAAZE00000009	CDS	53940425	53940486	+
GWHAAZE00000009	CDS	53940635	53940779	+
GWHAAZE00000009	CDS	53940996	53941214	+
GWHAAZE00000009	CDS	53941304	53941485	+
GWHAAZE00000009	CDS	53941588	53941763	+
GWHAAZE00000009	CDS	53941884	53942041	+

Transcript Sequence
>GWHTAAZE031182 ATGGCACCGGAACCAGAAGATGAGATGAAGGACGAGAAGAACCCCCCACCTCTTGATGAAGACGATATTGCTCTCCTCAAGACTTATGGCTTGGGGCCATATTCTACCAGCATAAAGAAAGCAGAGAAAGAAATTAAGGAAATGGCTAAAAACATTAATGATTTGTGTGGTATTAAGGAGTCTGACACTGGCTTAGCGGCACCCAGCCAGTGGGATCTTGTTTCTGATAAGCAGATGATGCAAGAGGAGCAACCTCTTCAGGTGGCAAGATGCACAAAGATAATTAGCCCAAACACTGAAGAGGCAAAATATGTTATAAATGTTAAGCAAATTGCAAAGTTTGTTGTTGGGTTGGGTGACAAAGTTTCCCCAACTGATATTGAAGAAGGCATGCGTGTTGGTGTTGATCGAAATAAATATCAAATTCAGATTCCCTTACCTCCCAAGATTGATCCCAGTGTAACCATGATGACAGTGGAAGAAAAGCCAGATGTGACTTATAATGATGTTGGCGGATGTAAGGAGCAAATAGAAAAGATGCGAGAGGTTGTTGAGCTGCCCATGCTTCACCCTGAGAAATTTGTTAAGCTTGGGATTGATCCTCCCAAGGGTGTCCTATGCTATGGTCCACCTGGAACTGGAAAAACACTTTTGGCCAGAGCCGTGGCTAATAGAACTGATGCATGTTTTATACGCGTTATTGGAAGTGAGCTTGTTCAGAAGTATGTAGGCGAGGGTGCTCGGATGGTCCGGGAACTGTTTCAGATGGCCCGCTCAAAAAAAGCTTGCATCGTCTTTTTTGATGAAGTTGATGCCATTGGGGGTGCACGTTTTGATGATGGGGTTGGTGGAGATAATGAAGTTCAGCGGACTATGCTTGAAATTGTGAATCAGCTTGATGGATTCGATGCTCGTGGAAATATTAAAGTTCTAATGGCCACAAATAGACCTGACACGTTGGATCCCGCACTGCTACGTCCAGGACGGTTGGATCGCAAAGTTGAGTTCGGACTACCTGATCTGGAAAGTAGGACGCAGATATTTAAGATCCATACAAGGACAATGAATTGTGAAAGGGATATTCGCTTTGAACTTCTTGCTCGCCTTTGCCCAAATTCTACTGGAGCTGATATAAGAAGTGTGTGCACTGAAGCTGGAATGTACGCCATTAGGGCAAGGAGAAAGACAGTGACAGAGAAGGACTTTCTTGATGCAGTGAACAAAGTCATCAAAGGGTACCAGAAGTTCAGCGCAACCCCCAAGTACATGGTCTACAATTGA

Network for GWHGAAZE031148

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	205	337	2.40E-39
PF17862.2	AAA_lid_3	360	403	3.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03061	PSMC2, RPT1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	213.749
	SRR3591706	second leaf	118.075
	SRR3591707	mature leaf	100.316
	SRR3591708	Shoot apex	170.005
	SRR3591709	Stem	202.198
	SRR3591710	White floral bud	211.657
	SRR3591711	White flower	300.932
	SRR3591712	Green floral bud	213.071
	SRR3591713	Yellow flower	242.092
SRP173429	SRR8316895	Juvenile bud stage	91.674
	SRR8316896	Juvenile bud stage	132.514
	SRR8316897	Juvenile bud stage	59.178
	SRR8316894	Third green stage	55.101
	SRR8316900	Third green stage	168.051
	SRR8316901	Third green stage	157.080
	SRR8316898	Complete white stage	95.676
	SRR8316899	Complete white stage	227.639
	SRR8316903	Complete white stage	143.007
	SRR8316902	Silver flowering stage	114.669
	SRR8316904	Silver flowering stage	135.289
	SRR8316905	Silver flowering stage	67.303
	SRR8316906	Gold flowering stage	284.097
	SRR8316907	Gold flowering stage	279.932
	SRR8316908	Gold flowering stage	320.448
SRP132670	SRR6706286	Control	200.688
	SRR6706287	Light intensity 50%	214.362
	SRR6706288	Light intensity 20%	227.802
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	98.300
	CNS0095593	Slightly white alabastrum(diploid) 2	103.209
	CNS0095594	Slightly white alabastrum(diploid) 3	99.136
	CNS0095595	Whole white alabastrum(diploid) 2	96.566
	CNS0095596	Whole white alabastrum(diploid) 3	94.025
	CNS0095597	Whole white alabastrum(diploid) 4	99.361
	CNS0095598	Silvery flower (diploied) 1	103.121
	CNS0095599	Silvery flower (diploied) 2	100.880
	CNS0095600	Silvery flower (diploied) 3	170.642
	CNS0095601	Golden flower (diploid) 1	84.063
	CNS0095602	Golden flower (diploid) 2	131.593
	CNS0095603	Golden flower (diploid) 3	129.378
	CNS0095604	Slightly white alabastrum(tetraploid) 1	106.327
	CNS0095605	Slightly white alabastrum(tetraploid) 2	83.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	161.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	129.956
	CNS0095610	Silvery flower (tetraploid) 1	173.853
	CNS0095611	Silvery flower (tetraploid) 2	136.738
	CNS0095612	Silvery flower (tetraploid) 3	143.761
	CNS0095613	Golden flower (tetraploid) 1	117.190
	CNS0095614	Golden flower (tetraploid) 2	136.587
	CNS0095615	Golden flower (tetraploid) 3	150.461
CRA001975	CRR073297	Stem 1	177.341
	CRR073298	Stem 2	169.759
	CRR073299	Stem 3	180.870
	CRR073300	Leaf 1	211.825
	CRR073301	Leaf 2	199.567
	CRR073302	Leaf 3	210.357
	CRR073303	Juvenile bud 1	260.250
	CRR073304	Juvenile bud 2	221.290
	CRR073305	Juvenile bud 3	251.956
	CRR073306	Third green 1	177.976
	CRR073307	Third green 2	166.213
	CRR073308	Third green 3	167.549
	CRR073309	Second white 1	186.122
	CRR073310	Second white 2	215.396
	CRR073311	Second white 3	183.069
	CRR073312	Silver flowering 1	123.587
	CRR073313	Silver flowering 2	130.956
	CRR073314	Silver flowering 3	121.290
	CRR073315	Gold flowering 1	83.760
	CRR073316	Gold flowering 2	106.260
	CRR073317	Gold flowering 3	68.451
	CRR073318	Tawny withering 1	175.022
	CRR073319	Tawny withering 2	167.649
	CRR073320	Tawny withering 3	171.140