Gene detail

Detail information of GWHGAAZE031138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606552.1	0	PREDICTED: pectinesterase/pectinesterase inhibitor U1 [Nicotiana tomentosiformis]
COG	YP_005010945.1	5E-51	pectinesterase
Swissprot	tr\|Q43143\|PMEU1_SOLLC	0	Pectinesterase U1 (Precursor)
trEMBL	tr\|M1AIV9\|M1AIV9_SOLTU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G14310.1	0	pectin methylesterase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53841947	53845996	-
GWHAAZE00000009	mRNA	53841947	53845996	-
GWHAAZE00000009	exon	53841947	53842638	-
GWHAAZE00000009	exon	53844910	53845996	-
GWHAAZE00000009	CDS	53844910	53845996	-
GWHAAZE00000009	CDS	53841947	53842638	-

Transcript Sequence
>GWHTAAZE031172 ATGACTACGACTACTACCACTACCCCCATCAAAAGATTCTTCGCCGGAATGTCAGATTCCAGCAGACAAATGACCCCCTCTAACAAAAGGAAAAAACTCTTCCTAGCCATTTTCGCTTCCGTCCTTCTGGTGGCCGCCGTAATCGGCATCGTGGCCGGAGTAAAGTCTCAAAACAACTCCAAATCCAGCACCCATTCGGCAAGCATCATATCCACTTCAGCTCACACAGTACTAAAATCGTCGTGCAGTAGCACACTGTACCCCGATTTATGCTTCTCAACTCTGGCCTCGGAACCCGAATTGAGCAGCAAGGTAACGAGCCAAAAGGACGTTATCGAAGTCTCCATAAACATCACAACAAGGGCCGTCCAGCACAACTACTTCACCATAGAGAAACTTTATTTATGGAAGAACCTAACCAAGCGCGAGAAATTTGCTCTCCACGATTGCCTCGAGACAATCGACGAGACACTCATTGAGCTCCGCAAGGCCTACGATGATCTGGAGGAATACCCTACCAAAAAATCCCTATCCGCTCACGCCGATGACCTCAAAACTCTCCTCAGTTCCGCCATTACCAACCAAGAGACCTGCATCGACGGATTCTCCCACGACGACGCCGATAGGAAAGTGCGCAAAATTCTGATAAAAGGTCAGAGGAAAGTCGAGAAGCTTTGCAGTAACGTGCTTGCGATGATTAAAAACATGACTGATACGGATATGGAGAATGAGATGAAGTTAACGGGGAGGAATCTGAGGGAGCAGGAGGAGAAGGGCGAGTGGCCGGAGTGGCTGTCCGCCGGGGACAGGAGATTGTTGCAATCTCCGTCGGTTACGCCAAATACTGTAGTGGCGGCGGACGGGAGTGGGAACCACAGGACGGTGGCGGCAGCTGTTGCGGCTGCCCCTTCGCGGAGCACCACGAGATACGTGATAAGGATAAAGGCGGGGGTGTACAGGGAAAATGTAGATGTACCGAGCAGTAAGACGAACATAATGTTTATGGGAGACGGGAGAGTTAACACCATCATTACCGCCAGTAGGAACGTCCAGGATGGTAGCACTACCTTCAACTCTGCCACCGTTGCTGCCGTTGGCGAACGATTCTTGGCCCGAGATATAACATTTCAAAACGCTGCCGGACCCTCGAAGCACCAAGCTGTTGCACTTCGTGTTGGGTCCGACTTGTCAGCATTTTATCGATGTAACATGCTAGCGTACCAAGACACTCTCTACGTCCACTCCAACAGACAATTTTACATCAATTGCCTGGTGGCAGGTACAGTCGATTTTATCTTTGGCAATGCTGCAGCGGTGCTACAAGATTGTGATATCCATGCGCGTCGTCCCAATCCAGGGCAAAGGAACATGCTTACAGCCCAAGGTCGGACCGACCCTAACCAAAACACTGGAATTGTTATTCAAAAATGCAGGATCGGTCCCACCTCTGATTTACGTCCGGTCCAAAGTAGTTTCCCGACGTATCTTGGAAGGCCGTGGCAAGCGTATTCGAGGACAATTGTGATGCAATCGACGATCTCTGACATGATTAACCCAGCAGGGTGGTACCCGTGGGATGGTAATTTTGCACTAGATACGTTGTTTTATGGAGAGTACGCAAACACTGGGGCAGGGGCCTCCACGTCTGGGAGGGTGACATGGAGAGGTTTTAGGGTGATTACAAGTGCAACTGAGGCTCAGAGTTACACGCCTGGGAGGTTCATTGCTGGTGGTAGTTGGCTGGGTTCCACGGGATTCCCTTACTCTCTTGGTTTGTGA

Network for GWHGAAZE031138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	78	232	1.10E-28
PF01095.20	Pectinesterase	281	577	5.60E-144

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.384
	SRR3591706	second leaf	71.353
	SRR3591707	mature leaf	11.849
	SRR3591708	Shoot apex	70.646
	SRR3591709	Stem	15.407
	SRR3591710	White floral bud	15.620
	SRR3591711	White flower	13.426
	SRR3591712	Green floral bud	14.735
	SRR3591713	Yellow flower	0.539
SRP173429	SRR8316895	Juvenile bud stage	16.734
	SRR8316896	Juvenile bud stage	13.206
	SRR8316897	Juvenile bud stage	6.634
	SRR8316894	Third green stage	7.157
	SRR8316900	Third green stage	21.343
	SRR8316901	Third green stage	19.352
	SRR8316898	Complete white stage	11.860
	SRR8316899	Complete white stage	14.430
	SRR8316903	Complete white stage	25.780
	SRR8316902	Silver flowering stage	2.997
	SRR8316904	Silver flowering stage	4.805
	SRR8316905	Silver flowering stage	2.100
	SRR8316906	Gold flowering stage	0.685
	SRR8316907	Gold flowering stage	2.949
	SRR8316908	Gold flowering stage	2.867
SRP132670	SRR6706286	Control	31.811
	SRR6706287	Light intensity 50%	31.089
	SRR6706288	Light intensity 20%	26.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.411
	CNS0095593	Slightly white alabastrum(diploid) 2	9.218
	CNS0095594	Slightly white alabastrum(diploid) 3	7.489
	CNS0095595	Whole white alabastrum(diploid) 2	11.284
	CNS0095596	Whole white alabastrum(diploid) 3	7.644
	CNS0095597	Whole white alabastrum(diploid) 4	9.576
	CNS0095598	Silvery flower (diploied) 1	74.262
	CNS0095599	Silvery flower (diploied) 2	67.363
	CNS0095600	Silvery flower (diploied) 3	19.054
	CNS0095601	Golden flower (diploid) 1	43.256
	CNS0095602	Golden flower (diploid) 2	31.580
	CNS0095603	Golden flower (diploid) 3	32.912
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.554
	CNS0095610	Silvery flower (tetraploid) 1	3.942
	CNS0095611	Silvery flower (tetraploid) 2	12.608
	CNS0095612	Silvery flower (tetraploid) 3	4.894
	CNS0095613	Golden flower (tetraploid) 1	1.506
	CNS0095614	Golden flower (tetraploid) 2	1.214
	CNS0095615	Golden flower (tetraploid) 3	0.937
CRA001975	CRR073297	Stem 1	91.574
	CRR073298	Stem 2	79.537
	CRR073299	Stem 3	118.175
	CRR073300	Leaf 1	39.713
	CRR073301	Leaf 2	39.699
	CRR073302	Leaf 3	51.551
	CRR073303	Juvenile bud 1	23.325
	CRR073304	Juvenile bud 2	48.336
	CRR073305	Juvenile bud 3	54.798
	CRR073306	Third green 1	5.334
	CRR073307	Third green 2	4.947
	CRR073308	Third green 3	5.736
	CRR073309	Second white 1	0.823
	CRR073310	Second white 2	0.263
	CRR073311	Second white 3	0.171
	CRR073312	Silver flowering 1	0.329
	CRR073313	Silver flowering 2	0.750
	CRR073314	Silver flowering 3	0.867
	CRR073315	Gold flowering 1	34.586
	CRR073316	Gold flowering 2	48.357
	CRR073317	Gold flowering 3	50.997
	CRR073318	Tawny withering 1	40.043
	CRR073319	Tawny withering 2	30.918
	CRR073320	Tawny withering 3	40.866