Gene detail

Detail information of GWHGAAZE031132

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009609867.1	0	PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Nicotiana tomentosiformis]
COG	YP_007687373.1	1E-34	ribose 1,5-bisphosphate isomerase
Swissprot	tr\|B9RR88\|MTNA_RICCO	4E-15	Methylthioribose-1-phosphate isomerase {ECO:0000255\|HAMAP-Rule:MF_03119}
trEMBL	tr\|A0A068TP48\|A0A068TP48_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97797.1}
TAIR10	AT1G53880.1	6E-173	Eukaryotic translation initiation factor 2B (eIF-2B) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53762346	53771942	-
GWHAAZE00000009	mRNA	53762346	53771942	-
GWHAAZE00000009	exon	53771493	53771942	-
GWHAAZE00000009	exon	53764930	53765082	-
GWHAAZE00000009	exon	53764680	53764821	-
GWHAAZE00000009	exon	53762769	53763010	-
GWHAAZE00000009	exon	53762346	53762552	-
GWHAAZE00000009	CDS	53771493	53771942	-
GWHAAZE00000009	CDS	53764930	53765082	-
GWHAAZE00000009	CDS	53764680	53764821	-
GWHAAZE00000009	CDS	53762769	53763010	-
GWHAAZE00000009	CDS	53762346	53762552	-

Transcript Sequence
>GWHTAAZE031166 ATGTGGCGGAGATCAGCTTCATTCATCCTCGATAACCAATACCAACAACAACACCACCGCGACCTAGCCAAGCCCGACAGCCTTATTCTATCTCCACCCATCATCCCCTCCTCTTCCATGGCCGAAACCCTCCAAAACCCTAACCCTAATCCCAATATCTCCGCTTATTACCAGACTAGGGCCGCTCACCACGCAGTTGTCACCAGCGACTGGCTAGCCCAGGCTCAGGCCGCCGTCGCCCGGGAACCAAACGACCTCACCGTTGAAAATTCGAGCCATTCCGGTAAGCCTTTCAGTGTGATTGATGAATTCAATAACTGGCGGAAACAACCCGATTTGGCCGAGGCTGTGGCCGCTATTAGGGCTTTGGCTTCCTTTATTCGTTCCAGCGAGGCTACTACCATGATGGAGCTTGAGATTGAGCTCAAGAAGGCCTCTGATTCTCTCAAGTCATGGGATACAACTTCCATCTCTTTGACCGCGGGCTGTGATCTTTTCATGCGCTACGTAACGAGGACTTCAGCTTTGGAGTACGAGGACTTCAATTCAGCCAAGTCTCGCCTTCTTGAACGTGCAGAGAAGTTTGGGGAGATATCCTATAAGGCCCGCAGAATCATTGCAATGCTTAGTCAGGATTTTATTTTTGATGGTTGTACCATTTTGGTGCATGGTTTCTCGAGAGTGGTGTTGGAAGCTTTGAAGACAGCAGCACAAAGCGGGAAACTCTTTCGAGTATTTTGCACAGAGGGAAGGCCGGACAGGACAGGATTACGGTTTTCGAATGAACTAGTGAAGCTTGATGTTCCAGTGAAGCTCCTAATAGACTCAGCTGTGGCGTATAGCATGGACGAAGTTGACATGGTATTTGTTGGGGCGGATGGAGTAGTCGAGAGTGGAGGTATTATTAACATGATGGGAACTTACCAGATCGCTTTGGTGGCTAAAAGCATGAACAAACCGGTCTACGTGGCTGCTGAAAGCTACAAGTTTGCTCGTCTCTATCCATTGGACCAGAAAGATATGGTCCCTGCGTTACGCCCTATTGATTTTGGGGTACCCATCCCCTCCAAGGTTGAGGTTGAGACGTCTGCCCGGGATTATACACCTCCTCATTACCTGACCCTGCTCTTTACTGATCTGGGTGTTTTGACACCTTCGGTTGTTAGCGATGAGCTCATTCAGCTGTACTTGTAG

Network for GWHGAAZE031132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01008.18	IF-2B	111	385	1.00E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03239	EIF2B1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0044237	biological_process	cellular metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.800
	SRR3591706	second leaf	40.790
	SRR3591707	mature leaf	35.504
	SRR3591708	Shoot apex	35.080
	SRR3591709	Stem	38.874
	SRR3591710	White floral bud	53.264
	SRR3591711	White flower	63.602
	SRR3591712	Green floral bud	40.677
	SRR3591713	Yellow flower	55.374
SRP173429	SRR8316895	Juvenile bud stage	34.130
	SRR8316896	Juvenile bud stage	54.220
	SRR8316897	Juvenile bud stage	21.963
	SRR8316894	Third green stage	14.811
	SRR8316900	Third green stage	46.658
	SRR8316901	Third green stage	47.975
	SRR8316898	Complete white stage	20.769
	SRR8316899	Complete white stage	43.160
	SRR8316903	Complete white stage	38.709
	SRR8316902	Silver flowering stage	23.921
	SRR8316904	Silver flowering stage	28.765
	SRR8316905	Silver flowering stage	15.774
	SRR8316906	Gold flowering stage	46.034
	SRR8316907	Gold flowering stage	49.839
	SRR8316908	Gold flowering stage	52.897
SRP132670	SRR6706286	Control	41.831
	SRR6706287	Light intensity 50%	39.619
	SRR6706288	Light intensity 20%	40.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.958
	CNS0095593	Slightly white alabastrum(diploid) 2	42.521
	CNS0095594	Slightly white alabastrum(diploid) 3	46.833
	CNS0095595	Whole white alabastrum(diploid) 2	38.274
	CNS0095596	Whole white alabastrum(diploid) 3	35.895
	CNS0095597	Whole white alabastrum(diploid) 4	33.677
	CNS0095598	Silvery flower (diploied) 1	36.908
	CNS0095599	Silvery flower (diploied) 2	40.123
	CNS0095600	Silvery flower (diploied) 3	65.297
	CNS0095601	Golden flower (diploid) 1	27.520
	CNS0095602	Golden flower (diploid) 2	51.897
	CNS0095603	Golden flower (diploid) 3	53.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.858
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.344
	CNS0095610	Silvery flower (tetraploid) 1	65.566
	CNS0095611	Silvery flower (tetraploid) 2	60.655
	CNS0095612	Silvery flower (tetraploid) 3	77.213
	CNS0095613	Golden flower (tetraploid) 1	52.487
	CNS0095614	Golden flower (tetraploid) 2	62.513
	CNS0095615	Golden flower (tetraploid) 3	55.136
CRA001975	CRR073297	Stem 1	31.916
	CRR073298	Stem 2	30.884
	CRR073299	Stem 3	31.910
	CRR073300	Leaf 1	31.916
	CRR073301	Leaf 2	34.981
	CRR073302	Leaf 3	29.877
	CRR073303	Juvenile bud 1	32.947
	CRR073304	Juvenile bud 2	24.748
	CRR073305	Juvenile bud 3	31.195
	CRR073306	Third green 1	25.847
	CRR073307	Third green 2	26.272
	CRR073308	Third green 3	22.943
	CRR073309	Second white 1	44.662
	CRR073310	Second white 2	33.145
	CRR073311	Second white 3	34.248
	CRR073312	Silver flowering 1	40.681
	CRR073313	Silver flowering 2	44.909
	CRR073314	Silver flowering 3	39.995
	CRR073315	Gold flowering 1	17.662
	CRR073316	Gold flowering 2	20.321
	CRR073317	Gold flowering 3	18.112
	CRR073318	Tawny withering 1	32.000
	CRR073319	Tawny withering 2	31.189
	CRR073320	Tawny withering 3	30.860