Gene detail

Detail information of GWHGAAZE031131

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072679.1	1.857E-166	PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Sesamum indicum]
Swissprot	tr\|Q9SSA8\|RA212_ARATH	6E-80	Ethylene-responsive transcription factor RAP2-12
trEMBL	tr\|D8VD32\|D8VD32_ACTDE	4E-159	Ethylene response factor 5 {ECO:0000313\|EMBL:ADJ67434.1}
TAIR10	AT1G53910.3	3E-61	related to AP2 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53720352	53722172	-
GWHAAZE00000009	mRNA	53720352	53722172	-
GWHAAZE00000009	exon	53720352	53721226	-
GWHAAZE00000009	exon	53721914	53722172	-
GWHAAZE00000009	CDS	53721914	53722172	-
GWHAAZE00000009	CDS	53720352	53721226	-

Transcript Sequence
>GWHTAAZE031165 ATGTGTGGCGGTGCTATCATCTCCGACATAATTGCTCCAAGCAGCTCTCGTCGGCTCACTGCGGACCTTCTATGGAACACGGCTCTGAAGAAAAACCCTCGCAATTACTACTCTAAGCCCCTGCGATCTGATGTTATCATCGACCTTGATGATGAATTCGAGGCTGATTTTCAGGGATTCAAGGACTTCTCTGGTGACGAGGTTGAGGAAGTCAAGCCTTTCGCCTTCTCTGCTTCTCAAAAATCTGTTATTGCTCGAGGGTCCAAGTCTATGAAAACTGAGGAATTCAATGAGCAAGCTGAAAATTCGTCAAAGAGAAAGAGGAAAAATCAGTACAGGGGGATCCGACAGCGTCCATGGGGCAAGTGGGCTGCAGAGATACGTGACCCAAGGAAAGGAGTCCGAGTTTGGCTTGGAACTTTTAATACCGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTCGCAAGATTCGAGGCAAGAAGGCAAAAGTGAATTTCCCTGATGAAGCTGTTCGCAACGACTCAAAGCGCACTGTCAAGAAGAGCCTTTCAAGTTCACTTCCAAAGGAAAACCCAAACTTAGTCTTAGTTCAGCCCAGGCTGAACCAGAGTGTGGATTTCTCAAACAATCCTGAGTCTGACTACTACAGTCCTTTAGGTTTTGTGGAAGAGAAACCTGCAACTAAGCAGTATGGAGAGGAGCTCAAATCGTTAGCCCCATCGGACAGCCCACTGTATTTTAATTCTGATCAGGGAAGTAACTCTTTTGATTGTTCTGACTTTGGTTGGGGAGAACATTGCTCTAAGACTCCCGAAATAACGTCTGTTCTTGCTGCTACCATTGAAGGTGAAGAAGCTCAATTTATGGAAGATGCAAACCCATCAAAGAAACTCAAGTCTAATGTGCAGGACTTGGTTCCTGCTGAAGACAACACTGTGAAGGAGCTGTCTGAGGAGCTCTCTGGTTTTGAGGCCCAAATGAAGTTCTTTCAAATCCCATATCTGGAAGGGAATTGGGATGCTTCAGTGGGTGGTACCTTCCTTGGGGCAGACACAACTCAAGATGGTGGGAACTCGATGGATCTTTGGGGCTTTGATGACCTTGCGGCCATGGTGGGGGGATCTTTCTGA

Network for GWHGAAZE031131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	111	160	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	387.518
	SRR3591706	second leaf	174.805
	SRR3591707	mature leaf	191.540
	SRR3591708	Shoot apex	245.809
	SRR3591709	Stem	486.161
	SRR3591710	White floral bud	453.442
	SRR3591711	White flower	725.409
	SRR3591712	Green floral bud	297.062
	SRR3591713	Yellow flower	681.099
SRP173429	SRR8316895	Juvenile bud stage	176.050
	SRR8316896	Juvenile bud stage	251.795
	SRR8316897	Juvenile bud stage	112.310
	SRR8316894	Third green stage	114.849
	SRR8316900	Third green stage	243.717
	SRR8316901	Third green stage	253.413
	SRR8316898	Complete white stage	173.289
	SRR8316899	Complete white stage	423.818
	SRR8316903	Complete white stage	321.540
	SRR8316902	Silver flowering stage	259.596
	SRR8316904	Silver flowering stage	343.017
	SRR8316905	Silver flowering stage	196.527
	SRR8316906	Gold flowering stage	633.465
	SRR8316907	Gold flowering stage	646.923
	SRR8316908	Gold flowering stage	657.680
SRP132670	SRR6706286	Control	378.202
	SRR6706287	Light intensity 50%	386.384
	SRR6706288	Light intensity 20%	397.797
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	194.235
	CNS0095593	Slightly white alabastrum(diploid) 2	193.709
	CNS0095594	Slightly white alabastrum(diploid) 3	175.925
	CNS0095595	Whole white alabastrum(diploid) 2	172.641
	CNS0095596	Whole white alabastrum(diploid) 3	118.240
	CNS0095597	Whole white alabastrum(diploid) 4	152.175
	CNS0095598	Silvery flower (diploied) 1	318.623
	CNS0095599	Silvery flower (diploied) 2	245.269
	CNS0095600	Silvery flower (diploied) 3	503.495
	CNS0095601	Golden flower (diploid) 1	266.361
	CNS0095602	Golden flower (diploid) 2	494.266
	CNS0095603	Golden flower (diploid) 3	481.550
	CNS0095604	Slightly white alabastrum(tetraploid) 1	206.128
	CNS0095605	Slightly white alabastrum(tetraploid) 2	169.027
	CNS0095606	Slightly white alabastrum(tetraploid) 3	356.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	168.870
	CNS0095608	Whole white alabastrum(tetraploid) 2	98.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	235.855
	CNS0095610	Silvery flower (tetraploid) 1	447.263
	CNS0095611	Silvery flower (tetraploid) 2	426.176
	CNS0095612	Silvery flower (tetraploid) 3	428.281
	CNS0095613	Golden flower (tetraploid) 1	422.776
	CNS0095614	Golden flower (tetraploid) 2	398.895
	CNS0095615	Golden flower (tetraploid) 3	703.881
CRA001975	CRR073297	Stem 1	301.485
	CRR073298	Stem 2	259.684
	CRR073299	Stem 3	349.712
	CRR073300	Leaf 1	320.713
	CRR073301	Leaf 2	301.583
	CRR073302	Leaf 3	322.099
	CRR073303	Juvenile bud 1	359.705
	CRR073304	Juvenile bud 2	325.198
	CRR073305	Juvenile bud 3	461.099
	CRR073306	Third green 1	424.094
	CRR073307	Third green 2	414.233
	CRR073308	Third green 3	425.173
	CRR073309	Second white 1	568.143
	CRR073310	Second white 2	546.815
	CRR073311	Second white 3	526.289
	CRR073312	Silver flowering 1	543.859
	CRR073313	Silver flowering 2	594.436
	CRR073314	Silver flowering 3	557.730
	CRR073315	Gold flowering 1	220.838
	CRR073316	Gold flowering 2	264.276
	CRR073317	Gold flowering 3	268.883
	CRR073318	Tawny withering 1	494.829
	CRR073319	Tawny withering 2	420.870
	CRR073320	Tawny withering 3	607.248