Gene detail

Detail information of GWHGAAZE031127

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602638.1	3.2569E-161	PREDICTED: 40S ribosomal protein SA {ECO:0000255\|HAMAP-Rule:MF_03015}-like [Nicotiana tomentosiformis]
COG	YP_004004453.1	4E-55	30S ribosomal protein S2
Swissprot	tr\|O80377\|RSSA_DAUCA	2E-158	40S ribosomal protein SA {ECO:0000255\|HAMAP-Rule:MF_03015}
trEMBL	tr\|K4BEV0\|K4BEV0_SOLLC	5E-160	40S ribosomal protein SA {ECO:0000256\|HAMAP-Rule:MF_03015}
TAIR10	AT3G04770.2	1E-111	40s ribosomal protein SA B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53665557	53668258	+
GWHAAZE00000009	mRNA	53665557	53668258	+
GWHAAZE00000009	exon	53665557	53665686	+
GWHAAZE00000009	exon	53666707	53666969	+
GWHAAZE00000009	exon	53667143	53667340	+
GWHAAZE00000009	exon	53667506	53667716	+
GWHAAZE00000009	exon	53667942	53668258	+
GWHAAZE00000009	CDS	53665557	53665686	+
GWHAAZE00000009	CDS	53666707	53666969	+
GWHAAZE00000009	CDS	53667143	53667340	+
GWHAAZE00000009	CDS	53667506	53667716	+
GWHAAZE00000009	CDS	53667942	53668042	+
GWHAAZE00000009	three_prime_UTR	53668043	53668258	+

Transcript Sequence
>GWHTAAZE031161 ATGGCGACCTCGAAAACGCTTTCCACAAAAGAAGCAGATATACAGATGATGCTTGCTGCCGAAGTTCATCTTGGCACCAAAAACTGTGATTTCCAAATGGAGCGCTATGTCTTCAAGCGCCGCAACGATGGGATATACATTATTAATCTTGGGAAAACATGGGAGAAGCTCCAAATGGCAGCTAGGGTTATTGTTGCCATTGAGAACCCACAGGACATTATTGTTCAGTCTGCCAGACCCTATGGTCAGAGAGCCGTTCTGAAGTTTGCTCAGTATACTGGTGCTCATGCAATTGCTGGACGTCACACCCCTGGTACATTCACTAACCAGCTTCAGACTTCATTCAGTGAGCCTCGTCTCCTCATCTTAACTGATCCAAGAACTGATCACCAGCCCATCAAGGAAGCTGCACTGGGTAATATCCCAACCATTGCCTTCTGTGATACTGATTCTCCAATGGGGTATGTTGATATCGGTATTCCTGCCAATAACAAAGGGAAACATAGCATTGGTTGTCTGTTCTGGCTGTTGGCAAGGATGGTGCTGCAGATGCGAGGTGTTATCAACCAGGGACACAAGTGGGATGTTATGGTGGATCTATTTTTCTACAGGGAACCAGAGGAGGCTAAGGAACAACAAGAAGATGAAGCACCTGCAGTGGATTACCCTGATTATTCTGCTGGGGCAATGGGTGGTATTCAAGATCAGTGGTCTAGTCAAATTACAGATGCCCAATGGAACCAGGACGGAGCACCAGCCATTCCAGCAGTTCCTGGTGTTGGTTGGAGCCCAGATGCCAGTGTGCCAATTCCCGCTGGTGATGGATGGGATGCTGTAGCTGCACCTCCAGCGGCTGCAGTTCCAGTTGAAAACGTTCCACCACCTACTGGGTGGGAACTGTAGAAGCTTCTCTCTTTTCGTAGCCTTGAAACTAGCTCTCTTTCCATTTTCCAGTTAGTAGTTATCCTTTGGATGTTAGTTGGTATGTTATGTTTTGAAGTCGATATATTAATTTTGTGATTGGCCTGGGTTTTGAATTGGGATCGATATTTGAATTTTGGAGAATTTTGTTTGTTGGCTGCTATAAAGCAAAAAAAAAAAATGCTATATTTGGCTTAA

Network for GWHGAAZE031127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00318.21	Ribosomal_S2	17	111	2.40E-13
PF00318.21	Ribosomal_S2	116	181	1.90E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02998	RP-SAe, RPSA	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0015935	cellular_component	small ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	415.148
	SRR3591706	second leaf	182.974
	SRR3591707	mature leaf	95.908
	SRR3591708	Shoot apex	541.204
	SRR3591709	Stem	193.991
	SRR3591710	White floral bud	180.728
	SRR3591711	White flower	243.204
	SRR3591712	Green floral bud	370.248
	SRR3591713	Yellow flower	164.833
SRP173429	SRR8316895	Juvenile bud stage	220.026
	SRR8316896	Juvenile bud stage	289.348
	SRR8316897	Juvenile bud stage	155.980
	SRR8316894	Third green stage	115.660
	SRR8316900	Third green stage	423.611
	SRR8316901	Third green stage	384.322
	SRR8316898	Complete white stage	74.248
	SRR8316899	Complete white stage	356.591
	SRR8316903	Complete white stage	101.921
	SRR8316902	Silver flowering stage	79.954
	SRR8316904	Silver flowering stage	81.134
	SRR8316905	Silver flowering stage	34.464
	SRR8316906	Gold flowering stage	114.582
	SRR8316907	Gold flowering stage	116.365
	SRR8316908	Gold flowering stage	146.338
SRP132670	SRR6706286	Control	349.965
	SRR6706287	Light intensity 50%	357.468
	SRR6706288	Light intensity 20%	395.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	429.794
	CNS0095593	Slightly white alabastrum(diploid) 2	503.861
	CNS0095594	Slightly white alabastrum(diploid) 3	404.015
	CNS0095595	Whole white alabastrum(diploid) 2	368.936
	CNS0095596	Whole white alabastrum(diploid) 3	423.597
	CNS0095597	Whole white alabastrum(diploid) 4	279.563
	CNS0095598	Silvery flower (diploied) 1	244.689
	CNS0095599	Silvery flower (diploied) 2	207.691
	CNS0095600	Silvery flower (diploied) 3	189.413
	CNS0095601	Golden flower (diploid) 1	174.938
	CNS0095602	Golden flower (diploid) 2	167.292
	CNS0095603	Golden flower (diploid) 3	167.980
	CNS0095604	Slightly white alabastrum(tetraploid) 1	381.415
	CNS0095605	Slightly white alabastrum(tetraploid) 2	374.578
	CNS0095606	Slightly white alabastrum(tetraploid) 3	515.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	195.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	185.683
	CNS0095609	Whole white alabastrum(tetraploid) 3	389.876
	CNS0095610	Silvery flower (tetraploid) 1	186.342
	CNS0095611	Silvery flower (tetraploid) 2	158.126
	CNS0095612	Silvery flower (tetraploid) 3	116.580
	CNS0095613	Golden flower (tetraploid) 1	110.969
	CNS0095614	Golden flower (tetraploid) 2	147.716
	CNS0095615	Golden flower (tetraploid) 3	105.734
CRA001975	CRR073297	Stem 1	381.001
	CRR073298	Stem 2	389.038
	CRR073299	Stem 3	507.835
	CRR073300	Leaf 1	398.469
	CRR073301	Leaf 2	453.985
	CRR073302	Leaf 3	551.554
	CRR073303	Juvenile bud 1	485.596
	CRR073304	Juvenile bud 2	371.795
	CRR073305	Juvenile bud 3	503.493
	CRR073306	Third green 1	64.882
	CRR073307	Third green 2	63.788
	CRR073308	Third green 3	80.189
	CRR073309	Second white 1	93.126
	CRR073310	Second white 2	66.217
	CRR073311	Second white 3	49.765
	CRR073312	Silver flowering 1	71.088
	CRR073313	Silver flowering 2	131.562
	CRR073314	Silver flowering 3	79.966
	CRR073315	Gold flowering 1	170.620
	CRR073316	Gold flowering 2	181.153
	CRR073317	Gold flowering 3	186.975
	CRR073318	Tawny withering 1	388.490
	CRR073319	Tawny withering 2	337.950
	CRR073320	Tawny withering 3	389.214