Gene detail

Detail information of GWHGAAZE031120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625087.1	0	PREDICTED: ABC transporter B family member 19-like isoform X2 [Nicotiana tomentosiformis]
COG	YP_629357.1	1E-113	ABC transporter permease
Swissprot	tr\|Q9LJX0\|AB19B_ARATH	0	ABC transporter B family member 19
trEMBL	tr\|M1C3L8\|M1C3L8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400058977}
TAIR10	AT3G28860.1	0	ATP binding cassette subfamily B19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53614156	53619190	-
GWHAAZE00000009	mRNA	53614156	53619190	-
GWHAAZE00000009	exon	53614156	53614503	-
GWHAAZE00000009	exon	53614610	53616517	-
GWHAAZE00000009	exon	53616622	53616845	-
GWHAAZE00000009	exon	53616924	53617240	-
GWHAAZE00000009	exon	53617350	53617645	-
GWHAAZE00000009	exon	53617746	53617910	-
GWHAAZE00000009	exon	53618356	53618531	-
GWHAAZE00000009	exon	53618632	53618686	-
GWHAAZE00000009	exon	53618786	53619190	-
GWHAAZE00000009	CDS	53618786	53619190	-
GWHAAZE00000009	CDS	53618632	53618686	-
GWHAAZE00000009	CDS	53618356	53618531	-
GWHAAZE00000009	CDS	53617746	53617910	-
GWHAAZE00000009	CDS	53617350	53617645	-
GWHAAZE00000009	CDS	53616924	53617240	-
GWHAAZE00000009	CDS	53616622	53616845	-
GWHAAZE00000009	CDS	53614610	53616517	-
GWHAAZE00000009	CDS	53614156	53614503	-

Transcript Sequence
>GWHTAAZE031154 ATGGATGATTATAATTATAACACAGAGGAGGATGAGATTGAACATACTAAGCATGAATTGAAAAGCATTGAGAAAAAGAGGCACTTTGTTGATGATATTGTTGGTAGACAGTCAATTGGTAGCCATCATTATAGGGATGATGGGTTCAGTGATTTTGATAGGGAGTTTGGTTCTGAGGAAGAAGAAGGATTTGTTGATGAGGATGAAATTGGGGCTAGAAAGACAGTTGGCTTGTTTAGTTTGTTCAAGTATTCGACGAAATTGGATATGCTTATGATAATATTGGGTTGTGTGGGAGCTTTCATTAATGGAGGATCTCTTCCCTGGTATTCTCTTCTGTTTGGAACTTTTGTCAATAAAATTGCAGAAAATGACAAGGACCAGATGATGAGGCGTGCCGAGAAGATATGTCTCCTTATGTCTGGATTAGCAGCAATAGTAGTGGTTGGAGCATATATGGAGATCACTTGTTGGCGAATGGTGGGAGAGCGATCAGCTCATCGTATAAGAACAAAGTATCTAAGGGCAGTTTTGAGACAGGATGTCGGCTTTTTTGACACAGATATTAGTACTAGTGATATAATGCATGGGATCTCAAGCGATGTTGCTCAAATCCAAGAAGTGATGGGGGAGAAGATGGCGCATTTTGTTCATCACATATTTACCTTCATCTGTGGTTACGCCGTTGGTTTCTTAAAATCATGGAAGATATCTCTAGCAGTTTTCGCAGTAACCCCACTAACAATGTTCTGTGGTCTTGCATATAAGGCTGTATATGTTGGTCTATCTACAAAAGAAGTGGACTCATATCAAAAAGCCGGTAGCATTGCAGAACAAGCCATAAGTTCAATTAGAACTGTGTTTTCTTTTGTAGCGGAGGATAATTTGGCCGCAAAATATGCTGAAATGTTAGAGAAATCAGCACCTATTGGGGCAAAGATTGGGTTTGCAAAGGGTGTAGGAATGGGTGTTATTTACTTGGTCACGTATGCAACATGGGCATTGGCTTTCTGGTACGGTTCAATCTTGGTTGCGAAGGGAGAGATCACTGGTGGTGAAGCCATTGCTTGCTTCTTTGGTGTCAACGTGGGGGGAAGGGGATTGGCATTGTCACTGTCATATTTTGCTCAGTTTGCGCAAGGAACTGTAGCAGCCAGCCGAGTGTTTGAAGTTATAGACAGAATTCCAGAAATTGATCCCTACAGTCCTGAGGGGAGGAGACTCTCAAGTGTACGAGGAAAAATCGAGTTCAAAGGCATTACTTTTGCTTATCCATCTCGTCCAACTCTTCAGATTCTCCATGGTCTCAATTTAGTGGTTCCATCTTCAAAAACTCTAGCATTGGTTGGTGCTAGTGGAGGTGGCAAGTCCACTGTTTTTGCCCTTATAGAGAGGTTCTATGATCCAATCAAGGGTTTGATCATTTTGGACGGTCATGATATTAGGACATTGCAAGTGAAGTGGCTAAGAAGCCAGATAGGCATGGTGGGTCAAGAACCAGCTCTATTTGCATCCACCATACTAGAAAATGTAATGATGGGAAAGGAGAATGCTACAAAAAAGGAAGCTACTTCAGCTTGCATGGCTGCCAACGCCCACAACTTCATCTCTGAGCTTCCACAAGGCTATGATACCCAGGTTGGAGACCGAGGAACCCAACTCTCAGGTGGCCAAAAGCAGAGGATTGCATTGGCTCGAGCCATGATCAAGAACCCTAAAATCCTTCTCTTAGATGAGCCCACAAGTGCCTTGGACCCTGAATCTGAGTCTGTGGTCCAACAGGCCATTGACAAGATTTCCATGGGCCGAACTACCATTGTCATTGCTCATCGGCTAGCAACAGTAAGAAATGCTCACACGATTGTTGTTCTAGACAATGGCTCGGTCGTCGAGATTGGTGACCATCGTCAGCTCATGGAAAAATCTGGAGCCTACTATAGTCTTGTCAAGCTTGCTTCTGATGCGGTCGCACAACCTGTGCCGAAACAAAATGATATTCAAAAGGATACAAAGTTTTCTGTGCACGAGAAATCAAAGCAAGTATACGAGATCTCAAGATCGGAGTACTTCAAATCCATGCATGAAGGAAATCAAGTAGACGAGGAAGAACTAAGAGAAGTAAAGGCAAGGAAATTTAGACTTTCAAATATATGGAACCTGCAGAGGCCAGAGCTAGGCACGCTGTTATTAGGCTTTCTCTTGGGTATGGTTGCAGGTGCAATTCTCTCCATATTTCCATTAGTTCTAGGCCAAGCACTTAAAGTCTACTTCTACCCAGACAAAGCTAGGTTGAAAAGGGAAGTTGGGTACCTCTGTTTGGGAATAGTGGGGCTTGGCTTTGGGTGTATTATCTCCATGACTGGGCAGCAAGGTTTCTGTGGGTGGGCTGGTACAAAGCTCACAAAGAGGGTTAGAGATTTGTTGTTCCGGGCTATACTAACGCAAGAACCAGGCTGGTTTGATTTCGAAGAGAATTCCACTGGGGTACTTGTTTCAAAGCTTTCAGTTGATTGTCTCAGTTTTCGGTCAGTTCTTGGTGATCGGTTCTCGGTCTTATTGATGGGCTTGAGTTCAGCTGCTGTTGGCCTCGGAGTTTCATTTTTTATCCAGTGGAGATTATCTCTCTTAGCTGGTTTTCTTACGCCGTTCACACTTGGTGCCAGCTATTTAAGCTTGATCATTAATGTTGGGCCAAAATTGGATAACACTTCTTATGCCAAAGCCAGCAGCATAGCTGCAGGTGCAGTGTCCAATATAAGAACAGTGGCTACATTCTCCACTCAACAACAGATAGTCCAATCGTTCGATCGAGCTTTGCGTGAGCCAAAGAAAACATCAGTTAGAAGGTCACAGATTCTAGGGTTAGCCTTGGGGTTCTCTCAAGGTGCCATGTATGGAGCTTATACTCTAACCCTCTGGTTCGGCGCTTACCTTGTAAAAGAAGGCTACACAAACTTTGGGGATGTTTATAAAATCTTTCTCATACTTGTTCTAAGCTCATTTTCTGTCGGACAACTAGCTGGCCTTGCACCCGATACTTCCATGGCCCCAACTGCAATACCAGGTGTTTTTGATATCATGGACCGTAGATCATTAATAGCCAATGATCGCCACGAAGGCAAGAAGATTGAGAGGTCAAAGTTATTTGATCTTGAGTTCAAGATGGTGACATTTGCGTACCCTTGTAGACCAGATGTAATTGTGCTGAGGAACTTTAGCCTCAAGATCAAAGGTGGGACCATGGTGGCACTGGTAGGAGGAAGTGGGTCCGGAAAATCAACAGTGATATGGATGATGCAGAGGTTCTATGATCCAATTCAAGGCAAAGTGCTGATGGGGGGGATGGATTTGAAGGAGCTTAATTTGAAGTGGTTGAGGAAGCAAACAGCTTTAGTGGGTCAAGAGCCAGCACTTTTTGCCGGGAGCATAAGAGAAAACATTGCATTTGGAAATCCCAATGCTACATGGGCTGAGATTGAAGCAGCAGCTGACGAAGCTTACATTCACAAGTTCATTTGTGGCCTCCCCCAAGGCTATGAAACCGAGGTTGGTGAGAGTGGGGTACAGCTATCAGGTGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCTATACTGAAGAAATCAAAGGTGCTACTACTAGATGAAGCCAGCAGTGCACTTGACTTGGAATCAGAGAAACATATCCAAGATGCGCTTAGGAAGGTCTCGAAGCGGGCCACCACCATTGTGGTGGCTCATCGGCTTTCTACAATCAGAGAAGCCAATTTCATCGCAGTTGTTAAAGATGGTGCAGTCACAGAATACGGTAGCCATGATACTCTCATGGCTTCTCATCGTAGTGGTATCTATGCTAGCCTGGTTCGTGCAGAAACAGAAGCCAATGCTTTTTCTTGA

Network for GWHGAAZE031120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	93	362	8.30E-58
PF00005.28	ABC_tran	433	582	4.00E-33
PF00664.24	ABC_membrane	728	999	1.10E-48
PF00005.28	ABC_tran	1069	1217	1.50E-31

Protein Sequence

>GWHPAAZE031138
MDDYNYNTEEDEIEHTKHELKSIEKKRHFVDDIVGRQSIGSHHYRDDGFSDFDREFGSEEEEGFVDEDEIGARKTVGLFSLFKYSTKLDMLMIILGCVGAFINGGSLPWYSLLFGTFVNKIAENDKDQMMRRAEKICLLMSGLAAIVVVGAYMEITCWRMVGERSAHRIRTKYLRAVLRQDVGFFDTDISTSDIMHGISSDVAQIQEVMGEKMAHFVHHIFTFICGYAVGFLKSWKISLAVFAVTPLTMFCGLAYKAVYVGLSTKEVDSYQKAGSIAEQAISSIRTVFSFVAEDNLAAKYAEMLEKSAPIGAKIGFAKGVGMGVIYLVTYATWALAFWYGSILVAKGEITGGEAIACFFGVNVGGRGLALSLSYFAQFAQGTVAASRVFEVIDRIPEIDPYSPEGRRLSSVRGKIEFKGITFAYPSRPTLQILHGLNLVVPSSKTLALVGASGGGKSTVFALIERFYDPIKGLIILDGHDIRTLQVKWLRSQIGMVGQEPALFASTILENVMMGKENATKKEATSACMAANAHNFISELPQGYDTQVGDRGTQLSGGQKQRIALARAMIKNPKILLLDEPTSALDPESESVVQQAIDKISMGRTTIVIAHRLATVRNAHTIVVLDNGSVVEIGDHRQLMEKSGAYYSLVKLASDAVAQPVPKQNDIQKDTKFSVHEKSKQVYEISRSEYFKSMHEGNQVDEEELREVKARKFRLSNIWNLQRPELGTLLLGFLLGMVAGAILSIFPLVLGQALKVYFYPDKARLKREVGYLCLGIVGLGFGCIISMTGQQGFCGWAGTKLTKRVRDLLFRAILTQEPGWFDFEENSTGVLVSKLSVDCLSFRSVLGDRFSVLLMGLSSAAVGLGVSFFIQWRLSLLAGFLTPFTLGASYLSLIINVGPKLDNTSYAKASSIAAGAVSNIRTVATFSTQQQIVQSFDRALREPKKTSVRRSQILGLALGFSQGAMYGAYTLTLWFGAYLVKEGYTNFGDVYKIFLILVLSSFSVGQLAGLAPDTSMAPTAIPGVFDIMDRRSLIANDRHEGKKIERSKLFDLEFKMVTFAYPCRPDVIVLRNFSLKIKGGTMVALVGGSGSGKSTVIWMMQRFYDPIQGKVLMGGMDLKELNLKWLRKQTALVGQEPALFAGSIRENIAFGNPNATWAEIEAAADEAYIHKFICGLPQGYETEVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQDALRKVSKRATTIVVAHRLSTIREANFIAVVKDGAVTEYGSHDTLMASHRSGIYASLVRAETEANAFS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.037
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.090
	SRR3591709	Stem	0.405
	SRR3591710	White floral bud	0.021
	SRR3591711	White flower	0.068
	SRR3591712	Green floral bud	0.046
	SRR3591713	Yellow flower	0.041
SRP173429	SRR8316895	Juvenile bud stage	0.078
	SRR8316896	Juvenile bud stage	0.049
	SRR8316897	Juvenile bud stage	0.072
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.045
	SRR8316901	Third green stage	0.075
	SRR8316898	Complete white stage	0.044
	SRR8316899	Complete white stage	0.190
	SRR8316903	Complete white stage	0.171
	SRR8316902	Silver flowering stage	0.038
	SRR8316904	Silver flowering stage	0.027
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.080
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	0.062
	SRR6706287	Light intensity 50%	0.053
	SRR6706288	Light intensity 20%	0.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.077
	CNS0095593	Slightly white alabastrum(diploid) 2	0.098
	CNS0095594	Slightly white alabastrum(diploid) 3	0.068
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.079
	CNS0095597	Whole white alabastrum(diploid) 4	0.037
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.056
	CNS0095603	Golden flower (diploid) 3	0.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.026
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.037
	CNS0095612	Silvery flower (tetraploid) 3	0.020
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.001
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.048
	CRR073298	Stem 2	0.043
	CRR073299	Stem 3	0.099
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.020
	CRR073304	Juvenile bud 2	0.016
	CRR073305	Juvenile bud 3	0.022
	CRR073306	Third green 1	0.036
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.092
	CRR073314	Silver flowering 3	0.140
	CRR073315	Gold flowering 1	0.023
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.098
	CRR073320	Tawny withering 3	0.142