Detail information of GWHGAAZE031119


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004141719.18.1184E-147PREDICTED: 25.3 kDa vesicle transport protein-like [Cucumis sativus]
Swissprottr|Q94AU2|SEC22_ARATH4E-14325.3 kDa vesicle transport protein
trEMBLtr|A0A0A0K6X0|A0A0A0K6X0_CUCSA4E-147Uncharacterized protein {ECO:0000313|EMBL:KGN45465.1}
TAIR10AT1G11890.15E-113Synaptobrevin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5357652253581331-
GWHAAZE00000009mRNA5357652253581331-
GWHAAZE00000009exon5358105053581331-
GWHAAZE00000009exon5357964053579835-
GWHAAZE00000009exon5357939053579536-
GWHAAZE00000009exon5357815253578228-
GWHAAZE00000009exon5357652253576605-
GWHAAZE00000009CDS5358105053581331-
GWHAAZE00000009CDS5357964053579835-
GWHAAZE00000009CDS5357939053579536-
GWHAAZE00000009CDS5357815253578228-
GWHAAZE00000009CDS5357652253576605-
Transcript Sequence

Network for GWHGAAZE031119

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13774.7Longin391611.00E-17
PF00957.22Synaptobrevin1762564.50E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08517SEC22 SNARE interactions in vesicular transport map04130
Phagosomemap04145

Gene Ontology

GO term OntologyName
GO:0016192biological_processvesicle-mediated transport
GO:0016021cellular_componentintegral component of membrane

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE031119.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.393
SRR3591706second leaf17.330
SRR3591707mature leaf12.680
SRR3591708Shoot apex25.525
SRR3591709Stem25.235
SRR3591710White floral bud29.979
SRR3591711White flower21.548
SRR3591712Green floral bud34.609
SRR3591713Yellow flower17.077
SRP173429 SRR8316895Juvenile bud stage 17.274
SRR8316896Juvenile bud stage 25.009
SRR8316897Juvenile bud stage 12.288
SRR8316894Third green stage 13.990
SRR8316900Third green stage 33.349
SRR8316901Third green stage 30.926
SRR8316898Complete white stage 17.283
SRR8316899Complete white stage 38.802
SRR8316903Complete white stage 22.404
SRR8316902Silver flowering stage12.042
SRR8316904Silver flowering stage19.480
SRR8316905Silver flowering stage7.554
SRR8316906Gold flowering stage 19.437
SRR8316907Gold flowering stage 17.318
SRR8316908Gold flowering stage 17.966
SRP132670SRR6706286Control9.878
SRR6706287Light intensity 50%10.492
SRR6706288Light intensity 20%11.564
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.306
CNS0095593Slightly white alabastrum(diploid) 219.391
CNS0095594Slightly white alabastrum(diploid) 317.767
CNS0095595Whole white alabastrum(diploid) 219.963
CNS0095596Whole white alabastrum(diploid) 321.235
CNS0095597Whole white alabastrum(diploid) 417.343
CNS0095598Silvery flower (diploied) 118.793
CNS0095599Silvery flower (diploied) 215.464
CNS0095600Silvery flower (diploied) 325.473
CNS0095601Golden flower (diploid) 116.206
CNS0095602Golden flower (diploid) 222.521
CNS0095603Golden flower (diploid) 321.039
CNS0095604Slightly white alabastrum(tetraploid) 119.617
CNS0095605Slightly white alabastrum(tetraploid) 215.445
CNS0095606Slightly white alabastrum(tetraploid) 329.263
CNS0095607Whole white alabastrum(tetraploid) 112.986
CNS0095608Whole white alabastrum(tetraploid) 214.380
CNS0095609Whole white alabastrum(tetraploid) 325.778
CNS0095610Silvery flower (tetraploid) 120.664
CNS0095611Silvery flower (tetraploid) 221.665
CNS0095612Silvery flower (tetraploid) 322.022
CNS0095613Golden flower (tetraploid) 112.273
CNS0095614Golden flower (tetraploid) 219.013
CNS0095615Golden flower (tetraploid) 312.371
CRA001975CRR073297Stem 122.564
CRR073298Stem 223.312
CRR073299Stem 318.435
CRR073300Leaf 120.282
CRR073301Leaf 219.618
CRR073302Leaf 322.203
CRR073303Juvenile bud 122.528
CRR073304Juvenile bud 218.094
CRR073305Juvenile bud 317.297
CRR073306Third green 18.595
CRR073307Third green 211.207
CRR073308Third green 38.885
CRR073309Second white 16.469
CRR073310Second white 26.428
CRR073311Second white 34.557
CRR073312Silver flowering 16.171
CRR073313Silver flowering 24.762
CRR073314Silver flowering 35.607
CRR073315Gold flowering 113.713
CRR073316Gold flowering 210.835
CRR073317Gold flowering 36.247
CRR073318Tawny withering 121.231
CRR073319Tawny withering 217.980
CRR073320Tawny withering 329.952