Detail information of GWHGAAZE031110


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002532723.18.7689E-173proteasome subunit alpha type, putative [Ricinus communis]
COGYP_005842152.19E-53proteasome subunit Alpha
Swissprottr|Q9XG77|PSA6_TOBAC3E-172Proteasome subunit alpha type-6
trEMBLtr|B9T3A4|B9T3A4_RICCO3E-173Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIR10AT2G05840.17E-13020S proteasome subunit PAA2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5337880953383384-
GWHAAZE00000009mRNA5337880953383384-
GWHAAZE00000009exon5338330953383384-
GWHAAZE00000009exon5338291753383011-
GWHAAZE00000009exon5338274353382824-
GWHAAZE00000009exon5338246253382558-
GWHAAZE00000009exon5338213053382188-
GWHAAZE00000009exon5338184853381930-
GWHAAZE00000009exon5338113753381232-
GWHAAZE00000009exon5337950653379565-
GWHAAZE00000009exon5337880953378901-
GWHAAZE00000009CDS5338330953383384-
GWHAAZE00000009CDS5338291753383011-
GWHAAZE00000009CDS5338274353382824-
GWHAAZE00000009CDS5338246253382558-
GWHAAZE00000009CDS5338213053382188-
GWHAAZE00000009CDS5338184853381930-
GWHAAZE00000009CDS5338113753381232-
GWHAAZE00000009CDS5337950653379565-
GWHAAZE00000009CDS5337880953378901-
Transcript Sequence

Network for GWHGAAZE031110

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.10Proteasome_A_N9314.30E-15
PF00227.27Proteasome352206.20E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02730PSMA6 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0051603biological_processproteolysis involved in cellular protein catabolic process
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex
GO:0005839cellular_componentproteasome core complex
GO:0004175molecular_functionendopeptidase activity
GO:0004298molecular_functionthreonine-type endopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf130.564
SRR3591706second leaf77.766
SRR3591707mature leaf25.818
SRR3591708Shoot apex141.458
SRR3591709Stem56.843
SRR3591710White floral bud48.860
SRR3591711White flower103.008
SRR3591712Green floral bud93.283
SRR3591713Yellow flower62.674
SRP173429 SRR8316895Juvenile bud stage 73.804
SRR8316896Juvenile bud stage 91.812
SRR8316897Juvenile bud stage 51.025
SRR8316894Third green stage 38.833
SRR8316900Third green stage 128.932
SRR8316901Third green stage 119.430
SRR8316898Complete white stage 32.249
SRR8316899Complete white stage 107.827
SRR8316903Complete white stage 43.681
SRR8316902Silver flowering stage37.387
SRR8316904Silver flowering stage40.601
SRR8316905Silver flowering stage20.117
SRR8316906Gold flowering stage 96.822
SRR8316907Gold flowering stage 102.426
SRR8316908Gold flowering stage 107.050
SRP132670SRR6706286Control102.582
SRR6706287Light intensity 50%106.469
SRR6706288Light intensity 20%125.581
CNP0000432CNS0095592Slightly white alabastrum(diploid) 190.818
CNS0095593Slightly white alabastrum(diploid) 2107.797
CNS0095594Slightly white alabastrum(diploid) 390.265
CNS0095595Whole white alabastrum(diploid) 288.305
CNS0095596Whole white alabastrum(diploid) 391.777
CNS0095597Whole white alabastrum(diploid) 460.927
CNS0095598Silvery flower (diploied) 169.427
CNS0095599Silvery flower (diploied) 266.667
CNS0095600Silvery flower (diploied) 369.722
CNS0095601Golden flower (diploid) 151.203
CNS0095602Golden flower (diploid) 253.317
CNS0095603Golden flower (diploid) 347.708
CNS0095604Slightly white alabastrum(tetraploid) 1104.049
CNS0095605Slightly white alabastrum(tetraploid) 289.540
CNS0095606Slightly white alabastrum(tetraploid) 3144.732
CNS0095607Whole white alabastrum(tetraploid) 155.453
CNS0095608Whole white alabastrum(tetraploid) 251.799
CNS0095609Whole white alabastrum(tetraploid) 3119.477
CNS0095610Silvery flower (tetraploid) 187.851
CNS0095611Silvery flower (tetraploid) 279.885
CNS0095612Silvery flower (tetraploid) 363.064
CNS0095613Golden flower (tetraploid) 158.103
CNS0095614Golden flower (tetraploid) 274.366
CNS0095615Golden flower (tetraploid) 369.187
CRA001975CRR073297Stem 1139.410
CRR073298Stem 2123.653
CRR073299Stem 3142.596
CRR073300Leaf 1117.160
CRR073301Leaf 2131.456
CRR073302Leaf 3172.151
CRR073303Juvenile bud 1148.536
CRR073304Juvenile bud 2120.379
CRR073305Juvenile bud 394.037
CRR073306Third green 134.437
CRR073307Third green 240.942
CRR073308Third green 338.452
CRR073309Second white 164.919
CRR073310Second white 266.413
CRR073311Second white 334.976
CRR073312Silver flowering 125.338
CRR073313Silver flowering 233.833
CRR073314Silver flowering 327.857
CRR073315Gold flowering 174.912
CRR073316Gold flowering 284.944
CRR073317Gold flowering 354.585
CRR073318Tawny withering 1119.247
CRR073319Tawny withering 2108.890
CRR073320Tawny withering 3143.801