Detail information of GWHGAAZE031100


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273796.10PREDICTED: probable GTP diphosphokinase RSH3, chloroplastic [Vitis vinifera]
COGNP_622821.19E-93guanosine polyphosphate pyrophosphohydrolase/synthetase
Swissprottr|Q9SYH1|RSH3C_ARATH0Probable GTP diphosphokinase RSH3, chloroplastic (Precursor)
trEMBLtr|F6HXV9|F6HXV9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59284.1}
TAIR10AT1G54130.10RELA/SPOT homolog 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5320069653204496-
GWHAAZE00000009mRNA5320069653204496-
GWHAAZE00000009exon5320069653200986-
GWHAAZE00000009exon5320126953201602-
GWHAAZE00000009exon5320168053201838-
GWHAAZE00000009exon5320214453202604-
GWHAAZE00000009exon5320352953203714-
GWHAAZE00000009exon5320382353204070-
GWHAAZE00000009exon5320416953204496-
GWHAAZE00000009CDS5320416953204496-
GWHAAZE00000009CDS5320382353204070-
GWHAAZE00000009CDS5320352953203714-
GWHAAZE00000009CDS5320214453202604-
GWHAAZE00000009CDS5320168053201838-
GWHAAZE00000009CDS5320126953201602-
GWHAAZE00000009CDS5320069653200986-
Transcript Sequence

Network for GWHGAAZE031100

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13328.7HD_41833356.50E-40
PF04607.18RelA_SpoT3945032.00E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00951relA Metabolic pathways map01100
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0015969biological_processguanosine tetraphosphate metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.927
SRR3591706second leaf20.141
SRR3591707mature leaf32.402
SRR3591708Shoot apex17.217
SRR3591709Stem44.984
SRR3591710White floral bud51.892
SRR3591711White flower141.194
SRR3591712Green floral bud28.037
SRR3591713Yellow flower139.628
SRP173429 SRR8316895Juvenile bud stage 15.901
SRR8316896Juvenile bud stage 17.620
SRR8316897Juvenile bud stage 9.156
SRR8316894Third green stage 6.131
SRR8316900Third green stage 16.366
SRR8316901Third green stage 19.152
SRR8316898Complete white stage 12.718
SRR8316899Complete white stage 24.671
SRR8316903Complete white stage 20.539
SRR8316902Silver flowering stage44.860
SRR8316904Silver flowering stage61.977
SRR8316905Silver flowering stage34.606
SRR8316906Gold flowering stage 153.919
SRR8316907Gold flowering stage 118.206
SRR8316908Gold flowering stage 132.495
SRP132670SRR6706286Control11.736
SRR6706287Light intensity 50%14.047
SRR6706288Light intensity 20%14.317
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.394
CNS0095593Slightly white alabastrum(diploid) 218.132
CNS0095594Slightly white alabastrum(diploid) 317.054
CNS0095595Whole white alabastrum(diploid) 213.469
CNS0095596Whole white alabastrum(diploid) 310.782
CNS0095597Whole white alabastrum(diploid) 416.415
CNS0095598Silvery flower (diploied) 136.475
CNS0095599Silvery flower (diploied) 234.038
CNS0095600Silvery flower (diploied) 380.948
CNS0095601Golden flower (diploid) 136.891
CNS0095602Golden flower (diploid) 280.938
CNS0095603Golden flower (diploid) 376.360
CNS0095604Slightly white alabastrum(tetraploid) 14.805
CNS0095605Slightly white alabastrum(tetraploid) 22.899
CNS0095606Slightly white alabastrum(tetraploid) 39.171
CNS0095607Whole white alabastrum(tetraploid) 14.196
CNS0095608Whole white alabastrum(tetraploid) 23.865
CNS0095609Whole white alabastrum(tetraploid) 39.435
CNS0095610Silvery flower (tetraploid) 140.373
CNS0095611Silvery flower (tetraploid) 222.435
CNS0095612Silvery flower (tetraploid) 333.200
CNS0095613Golden flower (tetraploid) 126.932
CNS0095614Golden flower (tetraploid) 228.845
CNS0095615Golden flower (tetraploid) 355.980
CRA001975CRR073297Stem 116.603
CRR073298Stem 215.062
CRR073299Stem 316.247
CRR073300Leaf 120.570
CRR073301Leaf 219.937
CRR073302Leaf 314.464
CRR073303Juvenile bud 115.634
CRR073304Juvenile bud 220.166
CRR073305Juvenile bud 320.445
CRR073306Third green 149.555
CRR073307Third green 243.104
CRR073308Third green 346.208
CRR073309Second white 164.508
CRR073310Second white 296.090
CRR073311Second white 3111.088
CRR073312Silver flowering 1158.207
CRR073313Silver flowering 2135.808
CRR073314Silver flowering 3138.648
CRR073315Gold flowering 117.177
CRR073316Gold flowering 240.174
CRR073317Gold flowering 324.561
CRR073318Tawny withering 126.075
CRR073319Tawny withering 261.712
CRR073320Tawny withering 324.237