Gene detail

Detail information of GWHGAAZE031084

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100114.1	0	PREDICTED: probable receptor-like protein kinase At1g67000 [Sesamum indicum]
COG	YP_001958461.1	7E-26	hypothetical protein Aasi_1443
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	4E-148	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|M1CHY7\|M1CHY7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400067848}
TAIR10	AT1G66910.1	1E-123	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52852753	52855190	+
GWHAAZE00000009	mRNA	52852753	52855190	+
GWHAAZE00000009	exon	52852753	52853524	+
GWHAAZE00000009	exon	52853665	52853706	+
GWHAAZE00000009	exon	52854073	52855190	+
GWHAAZE00000009	CDS	52852753	52853524	+
GWHAAZE00000009	CDS	52853665	52853706	+
GWHAAZE00000009	CDS	52854073	52855190	+

Transcript Sequence
>GWHTAAZE031118 ATGCATCTCATTCTCTTCTTTCTGATCATAATCTCGCCTATTATTGCGATCCCACCATGTTTCTGCCAGGAAAATGATCAATACGCAACATGTGGAAACTCGTTTGACTGTGCAAATATTCGAAACATAGGCTATCCATTCTGGGGAGGGGACCGGCCAAACTACTGTGGCCGTAGCGGGTGCGAACTAACTAACTGCCAAGACGACGTCCCCTTAATCACAATCAACTCAATCTCGTTCCAGGTCCTTTCACTGGAAGAAGGAACCCAGTCCCTAACCCTGTCTAGAGCCGGCTTATATGAGGAAAATTGCCCAACTTCTTTCTTTAACACCACCTTTGACTCGACATCCTTCACCCCATTGTCCACTAATCGAATCGTAACCCTGCTCTACGGGTGCACCCTGCTCCCAGGCCAAATCACACCTATTACGACCCAGTTTAACTGCACCGCCAACGGAACCATAAGTATCAATTATTTCACGGTCGAAGCAGCTCTGGCTAGCAGTAACTTGGTGCTTTGTAGAAATAGCGTTACGGTACCTGCTAATGCAACGTCGGGTCAGGCTTTAGGTCGTATCGGGGGTACGACTGGGGACCTACAAGTGGCTCTGGCAAGTGGTTTTGGGGTTCAGTGGAATGCGAATAGTAGCTTGTGTGACCAATGCAGAGGTTCGAGTGGGCGGTGTGGGTCGAACCCGGACTCGGATTCATTTGCTTGCTATTGTGCTGATGGGGTGTATGATACTAGATGTAACACAACAGCTCAAAATGGACCTTCAACACGCTTGAGTCTTGCATCGAAACTCGCCATAGGCTTCTCAATCAGTGGGGCTGTGGTTATTATGGTTATTTTCATTATAATATTCTGCTACCATGAAAGATGGTTTAAGATCGGAAAGAAGGAAGAAATGGATAATAAAAATGTTGAAGCATTTCTAAGGAACCATGAATCTCTTACTCCCAGACGGTATGCCTATTATAATATCAAGAAAATGACCGACTCATTCGCAGATAAACTAGGCGAAGGAGGATATGGTAGTGTTTTCAAAGGAAAGCTATCAGATGGTCGTCTAGTAGCAGTAAAGCTCCTCAGTGACACTGATGGTGACGGGGCAGGCTTTGTTAATGAAGTTGCTAGCATTAGTAGAACTTCTCATGTCAACATAGTCACACTTCTAGGATTCTGCTTGGAGGGAAATAAACGAGCTCTCGTTTATGAATTCATGCCCAACAAATCATTGGACAAGTTCATAGGTAACAAAGGACCATCTTCTTTGGATTGGGAAACTTTGTACCGGATCGCAGTTGGCACTGCTCGAGGTCTAGAGTACCTACACCGAGGGTGCAACACAAGTATTGTACATTTCGACATAAAACCTGAAAACATTCTTTTGGACGAAGAATTCTGCCCAAAAATCTCCGATTTCGGCCTGGCTAAGCTATGTCAGAAGAAGAAGAGTATTGTATCCATGTTGTGTGCAAGAGGAACTCCTGGATACATTGCGCCGGAAGTATTTTCTAGAAACTTTGGTAAAGTATCTCATAAATCCGACGTTTATAGCTATGGAATGATGGTTATTAATATGGTTGGAGTAGAAAAGAAGACTGAAGTTGGATCGGATTTGGATAGTACTAGTGAAACGTACTTTCCATACTTCATTTACAAGCGCCTGGAACTTGGCAAAGATTTAGGAGTATTTCAAGGGTTGAAGAGTGAAGAGGAAGAAGAAACCGCGAGGAAAATGGTTATGGTGAGTTTGTGGTGTATTCAGACGAATCCGTTGGATCGGCCATCCATGAGTAAGGTGGTGGAGATGTTGGAAGGAAGTATTGAATTGCTTCAAGTTCCGCCGAAGCCTTTCTTGTTCTCTCCAATTAGAGCAAACCAAGATTCTTGCTTGTCATTATCAGGAAGTTGTGAGATCGAATGA

Network for GWHGAAZE031084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	31	95	6.80E-09
PF14380.7	WAK_assoc	168	245	1.10E-15
PF00069.26	Pkinase	338	605	1.10E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.076
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.141
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.333
	SRR3591710	White floral bud	0.041
	SRR3591711	White flower	0.106
	SRR3591712	Green floral bud	0.119
	SRR3591713	Yellow flower	0.331
SRP173429	SRR8316895	Juvenile bud stage	1.000
	SRR8316896	Juvenile bud stage	0.546
	SRR8316897	Juvenile bud stage	1.221
	SRR8316894	Third green stage	0.221
	SRR8316900	Third green stage	0.354
	SRR8316901	Third green stage	0.186
	SRR8316898	Complete white stage	0.083
	SRR8316899	Complete white stage	1.143
	SRR8316903	Complete white stage	0.064
	SRR8316902	Silver flowering stage	0.283
	SRR8316904	Silver flowering stage	0.384
	SRR8316905	Silver flowering stage	0.171
	SRR8316906	Gold flowering stage	3.061
	SRR8316907	Gold flowering stage	0.910
	SRR8316908	Gold flowering stage	3.292
SRP132670	SRR6706286	Control	0.428
	SRR6706287	Light intensity 50%	0.562
	SRR6706288	Light intensity 20%	0.399
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.955
	CNS0095593	Slightly white alabastrum(diploid) 2	1.670
	CNS0095594	Slightly white alabastrum(diploid) 3	1.530
	CNS0095595	Whole white alabastrum(diploid) 2	0.985
	CNS0095596	Whole white alabastrum(diploid) 3	0.258
	CNS0095597	Whole white alabastrum(diploid) 4	0.447
	CNS0095598	Silvery flower (diploied) 1	1.787
	CNS0095599	Silvery flower (diploied) 2	1.052
	CNS0095600	Silvery flower (diploied) 3	0.498
	CNS0095601	Golden flower (diploid) 1	1.764
	CNS0095602	Golden flower (diploid) 2	1.460
	CNS0095603	Golden flower (diploid) 3	1.148
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.915
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.387
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.496
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.638
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.824
	CNS0095610	Silvery flower (tetraploid) 1	1.724
	CNS0095611	Silvery flower (tetraploid) 2	1.328
	CNS0095612	Silvery flower (tetraploid) 3	1.432
	CNS0095613	Golden flower (tetraploid) 1	1.425
	CNS0095614	Golden flower (tetraploid) 2	2.192
	CNS0095615	Golden flower (tetraploid) 3	0.542
CRA001975	CRR073297	Stem 1	0.432
	CRR073298	Stem 2	0.211
	CRR073299	Stem 3	0.330
	CRR073300	Leaf 1	0.482
	CRR073301	Leaf 2	0.375
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.326
	CRR073304	Juvenile bud 2	0.083
	CRR073305	Juvenile bud 3	0.296
	CRR073306	Third green 1	0.141
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.143
	CRR073309	Second white 1	0.212
	CRR073310	Second white 2	0.070
	CRR073311	Second white 3	0.171
	CRR073312	Silver flowering 1	1.107
	CRR073313	Silver flowering 2	0.768
	CRR073314	Silver flowering 3	0.322
	CRR073315	Gold flowering 1	0.491
	CRR073316	Gold flowering 2	0.371
	CRR073317	Gold flowering 3	0.763
	CRR073318	Tawny withering 1	1.717
	CRR073319	Tawny withering 2	2.463
	CRR073320	Tawny withering 3	0.358