Gene detail

Detail information of GWHGAAZE031078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100114.1	0	PREDICTED: probable receptor-like protein kinase At1g67000 [Sesamum indicum]
COG	YP_001958461.1	6E-24	hypothetical protein Aasi_1443
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	7E-134	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|A0A068U2P6\|A0A068U2P6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02761.1}
TAIR10	AT1G66920.2	4E-128	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52791357	52793622	+
GWHAAZE00000009	mRNA	52791357	52793622	+
GWHAAZE00000009	exon	52791357	52792176	+
GWHAAZE00000009	exon	52792260	52792301	+
GWHAAZE00000009	exon	52792574	52793622	+
GWHAAZE00000009	CDS	52791357	52792176	+
GWHAAZE00000009	CDS	52792260	52792301	+
GWHAAZE00000009	CDS	52792574	52793622	+

Transcript Sequence
>GWHTAAZE031112 ATGGTTTCCAATCTGTTCCCCACAGCTTCATATCTCTTCTCTTTAACCATTGCCACCATAATATCCACCTTCATTATGGTGATTCTGCCATGTTTCTGTCAAGAAAATGATCAATACACAACATGTGGAGAGTCGTTCCAATGTGGACATATTCAAAACATAGGCTATCCATTCTGGGGAGGGAATCAGCCAGACTACTGCGGCCATAGCGCATTCGAGCTAAAAAACTGCCAAGGCGATGTCCCCTTAATCTCAATCAACTCAATCACATACTGGGTTCTTTCACTCAACAAAAGAACCCGGTCCCTAACCATAGCTAGAGCCGACTTTTGGGACAACACTTGTCCTACACTTCTCCTTAACGCCTCCTTGGACTCGACTCCCTTTTCCTCTTCTTCCACCAACCATATCATAGCCCTGTACTATGGGTGCACCACAGTCCGAGGCCAAGTCGCACCCCTTCTGAAGCAGTTTAACTGCACTGTGAATGGAACCGGAAGTGTCAATTATTTCATGCTCAATGTGGGCCCGGGTACGAGTGACATGCTGAGTTGTAATAGTAGTGTCAGGGTACCAGTTAATGGAACATGGGGTCAGGCTTTAGCTAGTACCACGGGTTCGACCCGTGACCTAGAATTGGCTCTGGCTAGTGGTTTTGAGGTTCGTTGGACTGCTAATGACACTTTCTGTAACCAATGCCAAGGTTTGGGTGGGCGGTGTGGGAACACGGGTTCAATTTATTTTCTTGCTATTGTGCTGATGGGGTGTATGATAGCATATGTAACACAACAACTCAAAATGGTATGCACCACTGATCTTTTACCTTCAAACCGCCTGAATCTTGGGTTGAAACTTGCCATAGTTATGGCCGGGAAGAAGGAAGATCAAATTGATGATAAAAATGTTGAAGCATTTCTAAGGAACCATGGATCTCTTACTCCAAAACGGTATGCCTATTTTGATATCAAGAAAATGACAAACTCATTTGCGGATAAACTAGGCGAAGGAGGATATGGCAGCGTTTTCAAAGGAAAGCTATCCGATGGTCGTCTAGTGGCTGTAAAGGTTCTCAATGATGTCAATGGAGATGGGATGGACTTTGTGAATGAAGTTTCTAGCATTAGTAGAACTTCTCATGTCAACATAGTCACACTGCTCGGATTCTGCTTGGAGAGGAATAAACGAGCTCTCGTTTATGAATTTATGCCCAATAAATCTTTAGACAAGTTTATACGTACCAGTGGATCATCTTCTTTGGATTGGGAAACATTATACCGAATTGCAGTTGGCACTGCTCGAGGTCTAGAGTACCTACACCAAGGGTGCAACACAAGGATTGTGCATTTCGACATAAAACCTGAAAACATTCTTCTGGATGAAGAATTCTGCCCAAAAATCTCCGATTTCGGTTTGGCTAAGCTATGCCAGAGGAAGAAAAGTATTGTCTCCATGTTGGGTGCAAGGGGAACTCCTGGATACATTGCGCCGGAAGTATTTTGTAGAAATTTTGGGGACGTGTCTCATAAATCCGACGTCTATAGCTTTGGAATGATGGTTATTAATATGGTTGGAGTAGGAAAGAAGATAGAAGTTAGATCGAATTCGGATAGTACAAGTGAAATGTACTTTGTAGATATTATTTACAAGTATTTGGAACTTGGCGAAAATTCAAGTCTACTTCAAGGGGTAAAGAATGAAGACAGAGAAGAAACGCGGAGGAAAATGGTTATGGTGAGTTTGTGGTGTATTCAAACGTATCCATCAGATCGGCCATCTATGAGTAAGGTGTTGGAGATGTTGGAAGGAAGTATTGAATCGATTGAAGTTGCGCCAAAGCCGTTCTTTCCTATGAGAGTGAACCTAGATTCTTTCTCGGCATTATCAGGAAGTTGTGAGATTGAACGACACTAG

Network for GWHGAAZE031078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	42	107	2.60E-11
PF14380.7	WAK_assoc	182	243	7.30E-10
PF00069.26	Pkinase	331	598	9.10E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.299
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.058
	SRR3591713	Yellow flower	0.154
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.160
	SRR8316897	Juvenile bud stage	0.056
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.016
	SRR8316901	Third green stage	0.019
	SRR8316898	Complete white stage	0.005
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.060
	SRR8316902	Silver flowering stage	0.102
	SRR8316904	Silver flowering stage	0.084
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	1.733
	SRR8316907	Gold flowering stage	0.310
	SRR8316908	Gold flowering stage	1.584
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.061
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.030
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.018
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.429
	CNS0095602	Golden flower (diploid) 2	0.091
	CNS0095603	Golden flower (diploid) 3	0.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.076
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.059
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.027
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.081
	CNS0095610	Silvery flower (tetraploid) 1	0.024
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.036
	CNS0095613	Golden flower (tetraploid) 1	0.061
	CNS0095614	Golden flower (tetraploid) 2	0.052
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.012
	CRR073298	Stem 2	0.006
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.019
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.055
	CRR073312	Silver flowering 1	0.208
	CRR073313	Silver flowering 2	0.156
	CRR073314	Silver flowering 3	0.101
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.148
	CRR073319	Tawny withering 2	0.650
	CRR073320	Tawny withering 3	0.000