Gene detail

Detail information of GWHGAAZE031072

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008373630.1	1.7771E-117	PREDICTED: casein kinase II subunit beta-like isoform X2 [Malus domestica]
Swissprot	tr\|P40228\|CSK2B_ARATH	2E-115	Casein kinase II subunit beta
trEMBL	tr\|M1CIX8\|M1CIX8_SOLTU	2E-117	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068358}
TAIR10	AT5G47080.1	3E-82	casein kinase II beta chain 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52558158	52566607	+
GWHAAZE00000009	mRNA	52558158	52566607	+
GWHAAZE00000009	exon	52558158	52558305	+
GWHAAZE00000009	exon	52564768	52564913	+
GWHAAZE00000009	exon	52565002	52565192	+
GWHAAZE00000009	exon	52566328	52566355	+
GWHAAZE00000009	exon	52566470	52566607	+
GWHAAZE00000009	CDS	52558158	52558305	+
GWHAAZE00000009	CDS	52564768	52564913	+
GWHAAZE00000009	CDS	52565002	52565192	+
GWHAAZE00000009	CDS	52566328	52566355	+
GWHAAZE00000009	CDS	52566470	52566607	+

Transcript Sequence
>GWHTAAZE031106 GAGGAGTCTGAAACCGACAGTGAGGAGTCAGATGCTAGCGGTTCTGATGGGGATGATACATCTTGGATCTCATGGTTTTGCAATCTTCGTGGGAACGAGTTCTTTTGTGAAGTTGATGATGATTACATCCAAGATGATTTTAACCTTTGTGCAATACCTAAATTATATCAGCTTGAATGTGTAGGTGATATGTTTACAGAGGAACAAAATGAATTGGTTGAATCAGCAGCAGAGATGCTCTATGGTCTAATTCATGTCCGGTACATATTAACAACTAAAGGAATGGCTGCCATGTTGGAGAAATACAAAAATGCTGAGTTTGGTAGATGTCCAAGGGTTTATTGCTGTGGACAACCCTGCCTCCCTCTTGGCCAGTCAGATATTCCTCGTCAAAGCACTGTAAAAATCTACTGTCCCAAGTGTGAAGATATTTATACCCCTCGATCCAGGTTTCAAGATAGTATCCTTTATACCCATTTTTGCAGTTTCTGCCATTCTGGCTCAAATAAAAAGCTAATAGACCTTGATGGAGCCTATTTTGGGTCCACATTTCCTCACCTATTCCTTATGACTTATGGGCACCTCAAACCACAAAAGACATCACAGAGCTACGTTCCCAGAGTGTTTGGTTTCAAGGTCCACAGGCCATGA

Network for GWHGAAZE031072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01214.19	CK_II_beta	21	153	5.80E-51
PF01214.19	CK_II_beta	159	212	6.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03115	CSNK2B	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005956	cellular_component	protein kinase CK2 complex
GO:0019887	molecular_function	protein kinase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.702
	SRR3591706	second leaf	9.271
	SRR3591707	mature leaf	7.895
	SRR3591708	Shoot apex	19.572
	SRR3591709	Stem	18.662
	SRR3591710	White floral bud	24.438
	SRR3591711	White flower	15.888
	SRR3591712	Green floral bud	18.730
	SRR3591713	Yellow flower	12.881
SRP173429	SRR8316895	Juvenile bud stage	12.606
	SRR8316896	Juvenile bud stage	17.222
	SRR8316897	Juvenile bud stage	17.072
	SRR8316894	Third green stage	6.421
	SRR8316900	Third green stage	15.531
	SRR8316901	Third green stage	16.036
	SRR8316898	Complete white stage	8.097
	SRR8316899	Complete white stage	17.589
	SRR8316903	Complete white stage	11.305
	SRR8316902	Silver flowering stage	8.143
	SRR8316904	Silver flowering stage	9.894
	SRR8316905	Silver flowering stage	3.812
	SRR8316906	Gold flowering stage	12.485
	SRR8316907	Gold flowering stage	14.909
	SRR8316908	Gold flowering stage	20.484
SRP132670	SRR6706286	Control	8.358
	SRR6706287	Light intensity 50%	11.697
	SRR6706288	Light intensity 20%	10.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.806
	CNS0095593	Slightly white alabastrum(diploid) 2	10.013
	CNS0095594	Slightly white alabastrum(diploid) 3	11.880
	CNS0095595	Whole white alabastrum(diploid) 2	15.097
	CNS0095596	Whole white alabastrum(diploid) 3	12.928
	CNS0095597	Whole white alabastrum(diploid) 4	14.012
	CNS0095598	Silvery flower (diploied) 1	10.898
	CNS0095599	Silvery flower (diploied) 2	9.284
	CNS0095600	Silvery flower (diploied) 3	16.319
	CNS0095601	Golden flower (diploid) 1	10.870
	CNS0095602	Golden flower (diploid) 2	11.022
	CNS0095603	Golden flower (diploid) 3	11.267
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.452
	CNS0095610	Silvery flower (tetraploid) 1	21.891
	CNS0095611	Silvery flower (tetraploid) 2	21.901
	CNS0095612	Silvery flower (tetraploid) 3	21.999
	CNS0095613	Golden flower (tetraploid) 1	14.146
	CNS0095614	Golden flower (tetraploid) 2	16.542
	CNS0095615	Golden flower (tetraploid) 3	24.541
CRA001975	CRR073297	Stem 1	10.149
	CRR073298	Stem 2	9.529
	CRR073299	Stem 3	9.308
	CRR073300	Leaf 1	11.663
	CRR073301	Leaf 2	8.907
	CRR073302	Leaf 3	7.116
	CRR073303	Juvenile bud 1	11.284
	CRR073304	Juvenile bud 2	5.493
	CRR073305	Juvenile bud 3	9.148
	CRR073306	Third green 1	5.330
	CRR073307	Third green 2	5.403
	CRR073308	Third green 3	8.605
	CRR073309	Second white 1	4.425
	CRR073310	Second white 2	4.836
	CRR073311	Second white 3	4.479
	CRR073312	Silver flowering 1	5.248
	CRR073313	Silver flowering 2	5.647
	CRR073314	Silver flowering 3	3.159
	CRR073315	Gold flowering 1	2.951
	CRR073316	Gold flowering 2	3.398
	CRR073317	Gold flowering 3	4.026
	CRR073318	Tawny withering 1	8.533
	CRR073319	Tawny withering 2	8.159
	CRR073320	Tawny withering 3	12.456