Detail information of GWHGAAZE031071


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008812707.15.95131E-13PREDICTED: casein kinase II subunit beta-like isoform X1 [Phoenix dactylifera]
Swissprottr|O80507|CSK2E_ARATH5E-11Putative casein kinase II subunit beta-4
trEMBLtr|L0L0D5|L0L0D5_COCNU8E-12Casein kinase beta chain {ECO:0000313|EMBL:AGB51444.1}
TAIR10AT2G44680.20.00008casein kinase II beta subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5255675552557205+
GWHAAZE00000009mRNA5255675552557205+
GWHAAZE00000009exon5255675552557081+
GWHAAZE00000009exon5255719452557205+
GWHAAZE00000009CDS5255675552557081+
GWHAAZE00000009CDS5255719452557205+
Transcript Sequence

Network for GWHGAAZE031071

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03115CSNK2B Ribosome biogenesis in eukaryotes map03008
Wnt signaling pathwaymap04310
NF-kappa B signaling pathwaymap04064
Mitophagy - animalmap04137
Mitophagy - yeastmap04139
Adherens junctionmap04520
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.415
SRR3591706second leaf7.408
SRR3591707mature leaf6.633
SRR3591708Shoot apex13.819
SRR3591709Stem13.266
SRR3591710White floral bud15.728
SRR3591711White flower12.302
SRR3591712Green floral bud14.969
SRR3591713Yellow flower8.551
SRP173429 SRR8316895Juvenile bud stage 6.536
SRR8316896Juvenile bud stage 8.925
SRR8316897Juvenile bud stage 5.980
SRR8316894Third green stage 2.746
SRR8316900Third green stage 7.684
SRR8316901Third green stage 8.878
SRR8316898Complete white stage 4.750
SRR8316899Complete white stage 9.774
SRR8316903Complete white stage 8.160
SRR8316902Silver flowering stage3.779
SRR8316904Silver flowering stage6.214
SRR8316905Silver flowering stage2.718
SRR8316906Gold flowering stage 7.916
SRR8316907Gold flowering stage 9.192
SRR8316908Gold flowering stage 9.127
SRP132670SRR6706286Control6.136
SRR6706287Light intensity 50%7.699
SRR6706288Light intensity 20%8.449
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.003
CNS0095593Slightly white alabastrum(diploid) 23.763
CNS0095594Slightly white alabastrum(diploid) 35.414
CNS0095595Whole white alabastrum(diploid) 26.455
CNS0095596Whole white alabastrum(diploid) 35.991
CNS0095597Whole white alabastrum(diploid) 48.369
CNS0095598Silvery flower (diploied) 15.345
CNS0095599Silvery flower (diploied) 22.649
CNS0095600Silvery flower (diploied) 37.928
CNS0095601Golden flower (diploid) 15.184
CNS0095602Golden flower (diploid) 26.515
CNS0095603Golden flower (diploid) 37.217
CNS0095604Slightly white alabastrum(tetraploid) 17.137
CNS0095605Slightly white alabastrum(tetraploid) 26.531
CNS0095606Slightly white alabastrum(tetraploid) 311.503
CNS0095607Whole white alabastrum(tetraploid) 111.344
CNS0095608Whole white alabastrum(tetraploid) 26.347
CNS0095609Whole white alabastrum(tetraploid) 312.415
CNS0095610Silvery flower (tetraploid) 112.014
CNS0095611Silvery flower (tetraploid) 211.348
CNS0095612Silvery flower (tetraploid) 312.152
CNS0095613Golden flower (tetraploid) 15.763
CNS0095614Golden flower (tetraploid) 210.808
CNS0095615Golden flower (tetraploid) 312.046
CRA001975CRR073297Stem 17.743
CRR073298Stem 26.616
CRR073299Stem 38.686
CRR073300Leaf 111.196
CRR073301Leaf 27.578
CRR073302Leaf 36.176
CRR073303Juvenile bud 16.288
CRR073304Juvenile bud 25.991
CRR073305Juvenile bud 35.823
CRR073306Third green 15.064
CRR073307Third green 24.962
CRR073308Third green 38.083
CRR073309Second white 13.346
CRR073310Second white 24.061
CRR073311Second white 33.115
CRR073312Silver flowering 12.595
CRR073313Silver flowering 22.219
CRR073314Silver flowering 33.279
CRR073315Gold flowering 12.391
CRR073316Gold flowering 22.249
CRR073317Gold flowering 34.499
CRR073318Tawny withering 15.665
CRR073319Tawny withering 23.845
CRR073320Tawny withering 39.774