Detail information of GWHGAAZE031057


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007024627.11.79027E-77Nodulation-signaling pathway 1 protein, putative [Theobroma cacao]
Swissprottr|Q4VYC8|NSP1_MEDTR2E-66Nodulation-signaling pathway 1 protein
trEMBLtr|A0A061GJK7|A0A061GJK7_THECC7E-78Nodulation-signaling pathway 1 protein, putative {ECO:0000313|EMBL:EOY27249.1}
TAIR10AT3G13840.11E-33GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5236985452370261+
GWHAAZE00000009mRNA5236985452370261+
GWHAAZE00000009exon5236985452370261+
GWHAAZE00000009CDS5236985452370261+
Transcript Sequence

Network for GWHGAAZE031057

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS21254.00E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.626
SRR3591706second leaf0.565
SRR3591707mature leaf0.103
SRR3591708Shoot apex0.717
SRR3591709Stem2.554
SRR3591710White floral bud2.061
SRR3591711White flower1.118
SRR3591712Green floral bud0.872
SRR3591713Yellow flower0.944
SRP173429 SRR8316895Juvenile bud stage 4.214
SRR8316896Juvenile bud stage 5.211
SRR8316897Juvenile bud stage 4.093
SRR8316894Third green stage 0.393
SRR8316900Third green stage 1.384
SRR8316901Third green stage 1.891
SRR8316898Complete white stage 0.437
SRR8316899Complete white stage 4.190
SRR8316903Complete white stage 1.317
SRR8316902Silver flowering stage0.166
SRR8316904Silver flowering stage0.641
SRR8316905Silver flowering stage0.084
SRR8316906Gold flowering stage 0.680
SRR8316907Gold flowering stage 0.696
SRR8316908Gold flowering stage 0.605
SRP132670SRR6706286Control1.813
SRR6706287Light intensity 50%2.155
SRR6706288Light intensity 20%1.795
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.672
CNS0095593Slightly white alabastrum(diploid) 28.579
CNS0095594Slightly white alabastrum(diploid) 35.959
CNS0095595Whole white alabastrum(diploid) 24.989
CNS0095596Whole white alabastrum(diploid) 31.160
CNS0095597Whole white alabastrum(diploid) 43.121
CNS0095598Silvery flower (diploied) 113.359
CNS0095599Silvery flower (diploied) 219.624
CNS0095600Silvery flower (diploied) 33.258
CNS0095601Golden flower (diploid) 114.620
CNS0095602Golden flower (diploid) 27.715
CNS0095603Golden flower (diploid) 36.704
CNS0095604Slightly white alabastrum(tetraploid) 10.500
CNS0095605Slightly white alabastrum(tetraploid) 20.787
CNS0095606Slightly white alabastrum(tetraploid) 31.658
CNS0095607Whole white alabastrum(tetraploid) 11.537
CNS0095608Whole white alabastrum(tetraploid) 20.411
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 11.434
CNS0095611Silvery flower (tetraploid) 21.562
CNS0095612Silvery flower (tetraploid) 30.763
CNS0095613Golden flower (tetraploid) 10.371
CNS0095614Golden flower (tetraploid) 20.710
CNS0095615Golden flower (tetraploid) 30.751
CRA001975CRR073297Stem 10.604
CRR073298Stem 22.004
CRR073299Stem 32.430
CRR073300Leaf 12.546
CRR073301Leaf 22.854
CRR073302Leaf 32.929
CRR073303Juvenile bud 10.635
CRR073304Juvenile bud 21.835
CRR073305Juvenile bud 33.923
CRR073306Third green 10.730
CRR073307Third green 21.585
CRR073308Third green 32.548
CRR073309Second white 10.430
CRR073310Second white 21.894
CRR073311Second white 30.899
CRR073312Silver flowering 10.000
CRR073313Silver flowering 23.013
CRR073314Silver flowering 30.196
CRR073315Gold flowering 10.337
CRR073316Gold flowering 20.873
CRR073317Gold flowering 30.688
CRR073318Tawny withering 11.408
CRR073319Tawny withering 25.163
CRR073320Tawny withering 33.299