Gene detail

Detail information of GWHGAAZE031038

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006342955.1	0	PREDICTED: protein phosphatase 2C 16-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q9CAJ0\|P2C16_ARATH	0	Protein phosphatase 2C 16 (Precursor)
trEMBL	tr\|M0ZRP5\|M0ZRP5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006608}
TAIR10	AT1G72770.3	5E-154	homology to ABI1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52121836	52124414	+
GWHAAZE00000009	mRNA	52121836	52124414	+
GWHAAZE00000009	exon	52121836	52122636	+
GWHAAZE00000009	exon	52122854	52123204	+
GWHAAZE00000009	exon	52123319	52123424	+
GWHAAZE00000009	exon	52124068	52124414	+
GWHAAZE00000009	CDS	52121836	52122636	+
GWHAAZE00000009	CDS	52122854	52123204	+
GWHAAZE00000009	CDS	52123319	52123424	+
GWHAAZE00000009	CDS	52124068	52124414	+

Transcript Sequence
>GWHTAAZE031072 ATGATGGAAAAGATTTCTCCAGCTCTTGCAGTTACACTCAGTTTAAGTAATCCTATCTGCGATACCTCTGGAGCCACGAGCCATGTAGAAATAACTCAGCTCAAGCTTATGGCTGAGACGACGAGTTTGTTATCAGACCCTGCACCGGTTATCCATATTGAGTCTGTCACTAGCTGGGATGAGAATTGCAATGGTCTAGAGAGTGGGCTAAATATGGAAACCACACGCAAAAATGGGAGCAATTTGGTTTCTAGTGATGTTATGATTCAAGAACATGAAGGCGATGAAATTTTGTCGGTAGGGGATGACCCGCAGGGAATTAATATCGAGGAGATGCTTGCTTTGGGTTCTAGTTCAGAAAGAAGCTTGCCGATTGCTGTTGAATTCCAGGGAATTGGCAATGGTCAAATTGTTGCTAAGGTTATTAGTTTGAGAGAGCAAAGTATGGAAACGAAGCTGGCTGATGTTTTGTTAACCATGGCGGCTAGCAAAAACGAAGAGTGTTCCAGTGGGTCTACTCTAAAAGCATCTGTGATGGCTCTTCAGTTGCCTACAGAGAAGAATCCTGCCAAAGGTGGCATCAAAAGTGTTTTCGAATTGAATTATGTGCCCCTTTGGGGTTCTGTCTCTCTATGTGGAAAAAGGCCGGAGATGGAAGATGCTGTTGTGGTTGTACCTCAGTTTACAAAAATTCCTATTAGAATGCTTGTTGGCGATCGTGTAATTGACGGGATGACTCAAAATTTGAGTCACCTAACAAGTCATTTTTTTGGGGTGTATGATGGTCATGGAGGCTCTCAGGTAGCAAACTACTGTTTTGATCGGATCCATTTCGCTTTGGCAGAGGAGTTAACGGTTATGAAATATAATTCGGGCGAGGAAAGCACAAGAGACAGTAGACAGTCGCAGTGGGAGAAGGTCTTCACAAATTGTTTTCTAAGGGTTGATGATGAAGTTAGTGGAAAAGTTGGGAGAGACATCTCTGAAGACTCGTGTAACAGTATTTCTGAACCTGTAGCCCCTGAAACTGTTGGGTCTACTGCTGTGGTTGCACTAATCTGTTCATCCCATATTATAGTTGCAAACTGTGGTGATTCGAGGGCAGTGCTTTATCGTGGTAAAGAGGTCATTGCCTTGTCAATTGATCATAAACCGAACCGAGAAGATGAATATGCAAGGATTGAAGCATCAGGGGGCAAGGTCATACAGTGGAACGGACACCGTGTCTTTGGTGTTCTTGCAATGTCAAGGTCCATAGGTGATAGATATTTTAAACCGTGGATAATACCGGAGCCAGAAGTGAAATTTGTAGCAAGAGCAAGAGAAGACGAGTGCCTTATTTTAGCGAGTGATGGTCTATGGGATGTGATGACAAATGAGGAAGCATGTGAAGCGGCTAGAAGACGGATTTTGCTTTGGCACAAAAAGAATGGGGCTAGCGGGGTTGGGGTAACGGCTCTTGAAAGGGGTCAAGGGGTTGATCCTGCAGCACAAGCAGCAGCAGATTACCTATCAGGGCTTGCCCTCCAGAAGGGAAGCAAGGACAACATTTCGGTGATTGTGGTGGATTTGAAAGCTCAAAGGAAGTTTAAGACCAAATCTTGA

Network for GWHGAAZE031038

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	242	517	5.50E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0043169	molecular_function	cation binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.182
	SRR3591706	second leaf	40.644
	SRR3591707	mature leaf	51.707
	SRR3591708	Shoot apex	43.069
	SRR3591709	Stem	58.717
	SRR3591710	White floral bud	48.492
	SRR3591711	White flower	62.171
	SRR3591712	Green floral bud	41.965
	SRR3591713	Yellow flower	69.262
SRP173429	SRR8316895	Juvenile bud stage	27.509
	SRR8316896	Juvenile bud stage	35.589
	SRR8316897	Juvenile bud stage	16.918
	SRR8316894	Third green stage	20.005
	SRR8316900	Third green stage	52.877
	SRR8316901	Third green stage	51.010
	SRR8316898	Complete white stage	28.303
	SRR8316899	Complete white stage	83.090
	SRR8316903	Complete white stage	56.593
	SRR8316902	Silver flowering stage	31.013
	SRR8316904	Silver flowering stage	44.581
	SRR8316905	Silver flowering stage	21.728
	SRR8316906	Gold flowering stage	80.550
	SRR8316907	Gold flowering stage	72.214
	SRR8316908	Gold flowering stage	82.912
SRP132670	SRR6706286	Control	46.263
	SRR6706287	Light intensity 50%	60.599
	SRR6706288	Light intensity 20%	57.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.856
	CNS0095593	Slightly white alabastrum(diploid) 2	27.057
	CNS0095594	Slightly white alabastrum(diploid) 3	25.247
	CNS0095595	Whole white alabastrum(diploid) 2	25.075
	CNS0095596	Whole white alabastrum(diploid) 3	22.333
	CNS0095597	Whole white alabastrum(diploid) 4	20.835
	CNS0095598	Silvery flower (diploied) 1	54.724
	CNS0095599	Silvery flower (diploied) 2	38.484
	CNS0095600	Silvery flower (diploied) 3	84.128
	CNS0095601	Golden flower (diploid) 1	36.717
	CNS0095602	Golden flower (diploid) 2	71.109
	CNS0095603	Golden flower (diploid) 3	74.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.705
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.473
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.824
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.954
	CNS0095610	Silvery flower (tetraploid) 1	70.522
	CNS0095611	Silvery flower (tetraploid) 2	63.601
	CNS0095612	Silvery flower (tetraploid) 3	47.918
	CNS0095613	Golden flower (tetraploid) 1	44.284
	CNS0095614	Golden flower (tetraploid) 2	60.436
	CNS0095615	Golden flower (tetraploid) 3	66.689
CRA001975	CRR073297	Stem 1	46.522
	CRR073298	Stem 2	38.899
	CRR073299	Stem 3	26.582
	CRR073300	Leaf 1	48.527
	CRR073301	Leaf 2	39.762
	CRR073302	Leaf 3	32.810
	CRR073303	Juvenile bud 1	36.723
	CRR073304	Juvenile bud 2	31.937
	CRR073305	Juvenile bud 3	46.182
	CRR073306	Third green 1	19.913
	CRR073307	Third green 2	16.499
	CRR073308	Third green 3	20.658
	CRR073309	Second white 1	16.923
	CRR073310	Second white 2	20.472
	CRR073311	Second white 3	25.178
	CRR073312	Silver flowering 1	15.830
	CRR073313	Silver flowering 2	16.319
	CRR073314	Silver flowering 3	11.283
	CRR073315	Gold flowering 1	18.876
	CRR073316	Gold flowering 2	31.894
	CRR073317	Gold flowering 3	17.112
	CRR073318	Tawny withering 1	29.010
	CRR073319	Tawny withering 2	24.311
	CRR073320	Tawny withering 3	29.124