Gene detail

Detail information of GWHGAAZE031037

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654495.1	0	PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [Vitis vinifera]
COG	YP_002296383.1	1E-107	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
Swissprot	tr\|Q5M729\|ODP23_ARATH	0	Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|D7TZW9\|D7TZW9_VITVI	0	Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256\|RuleBase:RU361137}
TAIR10	AT1G54220.2	3E-174	Dihydrolipoamide acetyltransferase, long form protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52085006	52091009	+
GWHAAZE00000009	mRNA	52085006	52091009	+
GWHAAZE00000009	exon	52085006	52085047	+
GWHAAZE00000009	exon	52087157	52087254	+
GWHAAZE00000009	exon	52087662	52087710	+
GWHAAZE00000009	exon	52087808	52087861	+
GWHAAZE00000009	exon	52087992	52088084	+
GWHAAZE00000009	exon	52088493	52088732	+
GWHAAZE00000009	exon	52088846	52088918	+
GWHAAZE00000009	exon	52089028	52089125	+
GWHAAZE00000009	exon	52089321	52089406	+
GWHAAZE00000009	exon	52089490	52089565	+
GWHAAZE00000009	exon	52090053	52090120	+
GWHAAZE00000009	exon	52090202	52090268	+
GWHAAZE00000009	exon	52090367	52090462	+
GWHAAZE00000009	exon	52090542	52090644	+
GWHAAZE00000009	exon	52090743	52090838	+
GWHAAZE00000009	exon	52090939	52091009	+
GWHAAZE00000009	CDS	52085006	52085047	+
GWHAAZE00000009	CDS	52087157	52087254	+
GWHAAZE00000009	CDS	52087662	52087710	+
GWHAAZE00000009	CDS	52087808	52087861	+
GWHAAZE00000009	CDS	52087992	52088084	+
GWHAAZE00000009	CDS	52088493	52088732	+
GWHAAZE00000009	CDS	52088846	52088918	+
GWHAAZE00000009	CDS	52089028	52089125	+
GWHAAZE00000009	CDS	52089321	52089406	+
GWHAAZE00000009	CDS	52089490	52089565	+
GWHAAZE00000009	CDS	52090053	52090120	+
GWHAAZE00000009	CDS	52090202	52090268	+
GWHAAZE00000009	CDS	52090367	52090462	+
GWHAAZE00000009	CDS	52090542	52090644	+
GWHAAZE00000009	CDS	52090743	52090838	+
GWHAAZE00000009	CDS	52090939	52091009	+

Transcript Sequence
>GWHTAAZE031071 ATGCGCATTACTTTACTTGAGATTCAATTCCTCGTTGATAGCGTCACATTGGTGGGGATTAACAAGGGAAATGGTTCAAGGAAAGCAATGAAATTGGAAACTACAACAGCTGGATCAGTCTTCAGTGGAAGATTTTCATGGCTTTCCCCCACATCAAGAGATTGGGATGCCTTCTCTTTCACCTACAATGGTAATATTGCTAGGTGGTTGAAGAAAGAGGGCGATAAAGTTTCTCCTGGTGAAGATAAAGCGACGGTAGAGATGGAATGCATGGAGGAAGGATATCTAGCTAAGATATTACATGGAGATGGAACAAAAGAAATTAAAGTTGGTGAGGTGATTGCTGTAACAGTTGAAGAGGAGGAGGATGTTGCAAAATTCAAAGAATATAAACCTTCAACATCGGATGCTGGAGCTGCCCCAAAAGGCCCCCCTGTATCTACCCCCTCCAAAGAAGAGACAGTCGAGAAACCTGTCAGTCTACCAGAGCCAAAAGTTTCAAAGCCCGGTGCAACTCACGAGGCAGATCACATTTTTGCAAGTCCTCTGGCCAAAAAATTGGCCGAAGCACACAATATACCTCTCTCAAACATTAAAGGAACTGGTCCTGATGGAGGCATTGTGAAGGCTGATATTGAAGCTTATTTCGTTTCTGGTGTGAAGGGAGGCCCATCAGCAGTCCCTAAGGTTCACCCTACAACTGCTGTTTTAGATTGCAAAGATATCCCTAATTCTCAAATAAGAAAGGTCACAGCTTCACGGTTGTTACTCTCAAAGCAAACTATACCACATTACTATTTAACTGTAGATACATGTGTTGACAAACTTATAGATTTGCGGTCTAGACTCAATTCCCAGCAAGAAGCTTCAGGACGGAAGAAGATATCCATTAATGATCTAGTAATTAAGGCTGCTGCTTTGGCTCTTCGAAAAGTTCCCCAGTGCAACAGTTCGTGGACCATTGACTATATTCGCCAGTATCACAACATTAACATCAATGTTGCAGTGCAGACAGATAATGGGCTATTTGTTCCTGTTATCAGGGACGCTGACAAGAAAGGATTATCCAATCTTTCGGAAGACGTCAAAAACTTGGCCCAGAAGGCCAAGGAGAACAGCTTAAAACCTGAAGATTATGAGGGAGGTACATTTACCGTGTCGAATTTGGGAGGGCCATTTGGCATCAACCAATTTTGCGCTATCATCAATCCTCCTCAGGCTGGGATTCTAGCTGTTGGGTCCACTGAGAAGAAGGTTATAGCTTCTCTGGGTCCGGATCAATTCAAGTTCGCTTCTTTCATGCCCGTGTCGTTGAGTTGTGATCATCGCGTTATTGATGGTGCTATTGGTGCGGAATGGCTGAAAGCATTTAAAGGCTACATTGAGGACCCGGAGTCTATGTTGCTTTAA

Network for GWHGAAZE031037

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	63	116	6.60E-06
PF02817.18	E3_binding	178	213	1.50E-13
PF00198.24	2-oxoacid_dh	240	469	2.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00627	DLAT, aceF, pdhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0006090	biological_process	pyruvate metabolic process
GO:0045254	cellular_component	pyruvate dehydrogenase complex
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0004742	molecular_function	dihydrolipoyllysine-residue acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.167
	SRR3591706	second leaf	2.850
	SRR3591707	mature leaf	0.245
	SRR3591708	Shoot apex	7.055
	SRR3591709	Stem	1.422
	SRR3591710	White floral bud	5.144
	SRR3591711	White flower	10.763
	SRR3591712	Green floral bud	11.757
	SRR3591713	Yellow flower	9.103
SRP173429	SRR8316895	Juvenile bud stage	11.902
	SRR8316896	Juvenile bud stage	25.413
	SRR8316897	Juvenile bud stage	10.558
	SRR8316894	Third green stage	7.868
	SRR8316900	Third green stage	27.593
	SRR8316901	Third green stage	24.920
	SRR8316898	Complete white stage	3.663
	SRR8316899	Complete white stage	3.761
	SRR8316903	Complete white stage	5.193
	SRR8316902	Silver flowering stage	8.183
	SRR8316904	Silver flowering stage	12.568
	SRR8316905	Silver flowering stage	7.015
	SRR8316906	Gold flowering stage	20.713
	SRR8316907	Gold flowering stage	26.029
	SRR8316908	Gold flowering stage	18.574
SRP132670	SRR6706286	Control	8.250
	SRR6706287	Light intensity 50%	10.183
	SRR6706288	Light intensity 20%	10.434
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.292
	CNS0095593	Slightly white alabastrum(diploid) 2	14.125
	CNS0095594	Slightly white alabastrum(diploid) 3	19.399
	CNS0095595	Whole white alabastrum(diploid) 2	13.667
	CNS0095596	Whole white alabastrum(diploid) 3	21.608
	CNS0095597	Whole white alabastrum(diploid) 4	11.699
	CNS0095598	Silvery flower (diploied) 1	2.248
	CNS0095599	Silvery flower (diploied) 2	1.612
	CNS0095600	Silvery flower (diploied) 3	7.922
	CNS0095601	Golden flower (diploid) 1	2.045
	CNS0095602	Golden flower (diploid) 2	4.617
	CNS0095603	Golden flower (diploid) 3	4.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.023
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.981
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.563
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.387
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.577
	CNS0095610	Silvery flower (tetraploid) 1	9.406
	CNS0095611	Silvery flower (tetraploid) 2	5.989
	CNS0095612	Silvery flower (tetraploid) 3	11.107
	CNS0095613	Golden flower (tetraploid) 1	5.181
	CNS0095614	Golden flower (tetraploid) 2	7.043
	CNS0095615	Golden flower (tetraploid) 3	4.105
CRA001975	CRR073297	Stem 1	14.070
	CRR073298	Stem 2	11.693
	CRR073299	Stem 3	9.607
	CRR073300	Leaf 1	8.466
	CRR073301	Leaf 2	11.117
	CRR073302	Leaf 3	8.882
	CRR073303	Juvenile bud 1	10.307
	CRR073304	Juvenile bud 2	10.932
	CRR073305	Juvenile bud 3	5.874
	CRR073306	Third green 1	7.492
	CRR073307	Third green 2	7.948
	CRR073308	Third green 3	8.171
	CRR073309	Second white 1	9.327
	CRR073310	Second white 2	13.716
	CRR073311	Second white 3	13.815
	CRR073312	Silver flowering 1	9.931
	CRR073313	Silver flowering 2	6.214
	CRR073314	Silver flowering 3	9.033
	CRR073315	Gold flowering 1	1.135
	CRR073316	Gold flowering 2	1.039
	CRR073317	Gold flowering 3	0.361
	CRR073318	Tawny withering 1	1.766
	CRR073319	Tawny withering 2	2.361
	CRR073320	Tawny withering 3	2.436