Detail information of GWHGAAZE031036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011072549.12.66955E-46PREDICTED: telomere repeat-binding factor 4-like isoform X2 [Sesamum indicum]
Swissprottr|F4IEY4|TRB5_ARATH3E-19Telomere repeat-binding factor 5
trEMBLtr|A0A061GC92|A0A061GC92_THECC1E-45Homeodomain-like/winged-helix DNA-binding family protein, putative {ECO:0000313|EMBL:EOY27161.1}
TAIR10AT1G72740.12E-17Homeodomain-like/winged-helix DNA-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5207086152077133-
GWHAAZE00000009mRNA5207086152077133-
GWHAAZE00000009exon5207086152071148-
GWHAAZE00000009exon5207213652072220-
GWHAAZE00000009exon5207243452072517-
GWHAAZE00000009exon5207374352073875-
GWHAAZE00000009exon5207413152074373-
GWHAAZE00000009exon5207445552074524-
GWHAAZE00000009exon5207485152074949-
GWHAAZE00000009exon5207694852077133-
GWHAAZE00000009CDS5207694852077133-
GWHAAZE00000009CDS5207485152074949-
GWHAAZE00000009CDS5207445552074524-
GWHAAZE00000009CDS5207413152074373-
GWHAAZE00000009CDS5207374352073875-
GWHAAZE00000009CDS5207243452072517-
GWHAAZE00000009CDS5207213652072220-
GWHAAZE00000009CDS5207086152071148-
Transcript Sequence

Network for GWHGAAZE031036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding17445.00E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.924
SRR3591706second leaf6.402
SRR3591707mature leaf6.058
SRR3591708Shoot apex10.015
SRR3591709Stem11.004
SRR3591710White floral bud7.738
SRR3591711White flower6.813
SRR3591712Green floral bud6.217
SRR3591713Yellow flower5.654
SRP173429 SRR8316895Juvenile bud stage 7.884
SRR8316896Juvenile bud stage 11.259
SRR8316897Juvenile bud stage 5.186
SRR8316894Third green stage 4.175
SRR8316900Third green stage 10.693
SRR8316901Third green stage 9.446
SRR8316898Complete white stage 4.405
SRR8316899Complete white stage 14.872
SRR8316903Complete white stage 6.605
SRR8316902Silver flowering stage4.804
SRR8316904Silver flowering stage7.140
SRR8316905Silver flowering stage3.802
SRR8316906Gold flowering stage 8.761
SRR8316907Gold flowering stage 10.630
SRR8316908Gold flowering stage 9.336
SRP132670SRR6706286Control5.706
SRR6706287Light intensity 50%6.341
SRR6706288Light intensity 20%5.876
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.734
CNS0095593Slightly white alabastrum(diploid) 27.342
CNS0095594Slightly white alabastrum(diploid) 38.627
CNS0095595Whole white alabastrum(diploid) 28.896
CNS0095596Whole white alabastrum(diploid) 36.038
CNS0095597Whole white alabastrum(diploid) 46.398
CNS0095598Silvery flower (diploied) 113.564
CNS0095599Silvery flower (diploied) 210.316
CNS0095600Silvery flower (diploied) 38.224
CNS0095601Golden flower (diploid) 111.598
CNS0095602Golden flower (diploid) 210.297
CNS0095603Golden flower (diploid) 39.297
CNS0095604Slightly white alabastrum(tetraploid) 18.328
CNS0095605Slightly white alabastrum(tetraploid) 27.514
CNS0095606Slightly white alabastrum(tetraploid) 312.913
CNS0095607Whole white alabastrum(tetraploid) 17.875
CNS0095608Whole white alabastrum(tetraploid) 26.942
CNS0095609Whole white alabastrum(tetraploid) 38.597
CNS0095610Silvery flower (tetraploid) 113.751
CNS0095611Silvery flower (tetraploid) 211.618
CNS0095612Silvery flower (tetraploid) 39.180
CNS0095613Golden flower (tetraploid) 19.875
CNS0095614Golden flower (tetraploid) 212.881
CNS0095615Golden flower (tetraploid) 37.636
CRA001975CRR073297Stem 110.100
CRR073298Stem 29.369
CRR073299Stem 38.938
CRR073300Leaf 19.919
CRR073301Leaf 213.287
CRR073302Leaf 34.609
CRR073303Juvenile bud 16.632
CRR073304Juvenile bud 23.453
CRR073305Juvenile bud 35.418
CRR073306Third green 11.007
CRR073307Third green 21.775
CRR073308Third green 31.794
CRR073309Second white 11.194
CRR073310Second white 22.676
CRR073311Second white 31.748
CRR073312Silver flowering 10.605
CRR073313Silver flowering 21.144
CRR073314Silver flowering 31.716
CRR073315Gold flowering 14.123
CRR073316Gold flowering 24.452
CRR073317Gold flowering 31.950
CRR073318Tawny withering 16.771
CRR073319Tawny withering 28.580
CRR073320Tawny withering 39.389