Gene detail

Detail information of GWHGAAZE031034

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277513.2	0	PREDICTED: casein kinase I isoform delta-like [Vitis vinifera]
COG	YP_632759.1	2E-20	serine/threonine-protein kinase PKN1
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|D7TZW6\|D7TZW6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35912.3}
TAIR10	AT1G72710.1	2E-179	casein kinase 1-like protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52046423	52053018	+
GWHAAZE00000009	mRNA	52046423	52053018	+
GWHAAZE00000009	exon	52046423	52046498	+
GWHAAZE00000009	exon	52046603	52046643	+
GWHAAZE00000009	exon	52048110	52048179	+
GWHAAZE00000009	exon	52048282	52048430	+
GWHAAZE00000009	exon	52048527	52048622	+
GWHAAZE00000009	exon	52048717	52048787	+
GWHAAZE00000009	exon	52048949	52049010	+
GWHAAZE00000009	exon	52049660	52049723	+
GWHAAZE00000009	exon	52049810	52049894	+
GWHAAZE00000009	exon	52049981	52050107	+
GWHAAZE00000009	exon	52050242	52050318	+
GWHAAZE00000009	exon	52050393	52050456	+
GWHAAZE00000009	exon	52050611	52050802	+
GWHAAZE00000009	exon	52050877	52050940	+
GWHAAZE00000009	exon	52051909	52051963	+
GWHAAZE00000009	exon	52052664	52053018	+
GWHAAZE00000009	CDS	52046423	52046498	+
GWHAAZE00000009	CDS	52046603	52046643	+
GWHAAZE00000009	CDS	52048110	52048179	+
GWHAAZE00000009	CDS	52048282	52048430	+
GWHAAZE00000009	CDS	52048527	52048622	+
GWHAAZE00000009	CDS	52048717	52048787	+
GWHAAZE00000009	CDS	52048949	52049010	+
GWHAAZE00000009	CDS	52049660	52049723	+
GWHAAZE00000009	CDS	52049810	52049894	+
GWHAAZE00000009	CDS	52049981	52050107	+
GWHAAZE00000009	CDS	52050242	52050318	+
GWHAAZE00000009	CDS	52050393	52050456	+
GWHAAZE00000009	CDS	52050611	52050802	+
GWHAAZE00000009	CDS	52050877	52050940	+
GWHAAZE00000009	CDS	52051909	52051963	+
GWHAAZE00000009	CDS	52052664	52052963	+
GWHAAZE00000009	three_prime_UTR	52052964	52053018	+

Transcript Sequence
>GWHTAAZE031068 ATGGAGCCTCGTGTCGGTAATAAGTTTAGGCTTGGCCGGAAGATCGGTAGCGGCTCATTCGGAGAGATCTATCTAGGTACTAATGTTCAAACGAATGAAGAAGTTGCCATTAAGCTAGAAAATACCAAGACAAAGCATCCCCAATTGCTATACGAATCCAAGTTGTACAAACTACTCCAGGGAGGAACTGGAATTCCAACTTTGAAATGGTTTGGAGTTGAAGGAGATTATAATGTTCTTGTGATGGATTTACTGGGACCCAGTCTTGAAGATTTGTTTAACTTCTGTAATAGGAAGTTGTCTTTGAAGACTGTTCTTATGCTTGCAGATCAGATGATTAACCGGGTTGAATTTGTTCATTCAAAATCATTCCTTCATCGAGATATTAAGCCAGACAATTTTCTTATGGGTTTAGGGAGGCGTGCAAACCAGGTCTACGTCATTGACTTTGGACTAGCTAAGAAGTATATGGACTCATCAACCCATCAGCATATTCCATATAGAGAAAATAAAAATTTGACTGGAACAGCAAGATATGCTAGCATGAATACTCATCTTGGCATAGAACAAAGCCGGAGAGATGATCTAGAATCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGCCTCCCTTGGCAGGGACTCAAAGCTGGAAACAAGAAACAAAAGTATGAGAAGATCAGTGAAAAGAAAGTTTCAACCTCTATTGAGGTTTTATGTCGGGGCTATCCTTCGGAATTTGCATCATACTTCCATTACTGTCGTTCACTTCGGTTTGATGATAAGCCAGATTATGCTTATCTGAAGAGAATCTTTCGTGATCTTTTTATTCATGAAGGCTTTCAGTTTGATTACGTGTTTGACTGGACTATTTTGAAGTATCAACAATCACAGCTTTCAAATACCCCGTCTCGTCTTGCTAGTGCAGGAACCAGTTCTGGTATGCCTCCAGCTGTTGCCAATGTTAATAGACAATCGGCTGCATCTCTGGAGGCGAAGGTTAATGTGATTCATGCTATCGACCTTTTAGCAGGTACAGAAGAAGGAAGGCCTACTTTGTCTTCTGCAAATCCTTCTCGGATTAGAAGCACTGGAATGCCATTTAATGCTGGAAGCTTATCTAAACAAAAAAATCCAGTTGCAAATGAACCGAACATGAGTAAAGAAGTAGTACTTGTACCTACAGCAAATTATCCGCAGCTAGATGAATTACTCTTGCCTGTAGCATATTACATGCTTCAAAGAATGGGAGCTGGAAGAATTGTTGGTGTTTTTGAAAAGATGTACGAGCTATCTTCTAATATTTTGCGGTCAAGTGGTTCTTCAAGGCGACCTGCTGGATCTAGCAGTCGTGAGCCAGTGATTGTTGGGAGTGAATCAGACCCCTCTCGCGGCCGCATCACCACAGATGCAAGCCCGGGTACACTTAGAAAAACTTCTAGTGCTGCACAAAGTTCACCAGTTCCATCATCATCAGATCATCAGAAGCGCACTTCTACTAGAATCACATCTAACGTCAAGATCTTTGAATCCACTCTCAAGGGTATCGAGGACCTCCATTTTAACAATGATGGGAGTTTGCATTACTAGCCATTGATCACTCTTCATCTCACTGTTAATGTCAAAATATCAGTTATATACTCTA

Network for GWHGAAZE031034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	226	1.40E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K02218	CSNK1, CKI	MAPK signaling pathway - yeast	map04011
K02218	CSNK1, CKI	Hippo signaling pathway - multiple species	map04392

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.718
	SRR3591706	second leaf	23.080
	SRR3591707	mature leaf	21.056
	SRR3591708	Shoot apex	30.341
	SRR3591709	Stem	46.304
	SRR3591710	White floral bud	47.851
	SRR3591711	White flower	49.697
	SRR3591712	Green floral bud	53.304
	SRR3591713	Yellow flower	53.616
SRP173429	SRR8316895	Juvenile bud stage	28.104
	SRR8316896	Juvenile bud stage	42.774
	SRR8316897	Juvenile bud stage	16.623
	SRR8316894	Third green stage	18.146
	SRR8316900	Third green stage	52.443
	SRR8316901	Third green stage	46.532
	SRR8316898	Complete white stage	27.723
	SRR8316899	Complete white stage	71.157
	SRR8316903	Complete white stage	44.477
	SRR8316902	Silver flowering stage	25.126
	SRR8316904	Silver flowering stage	41.652
	SRR8316905	Silver flowering stage	18.105
	SRR8316906	Gold flowering stage	53.662
	SRR8316907	Gold flowering stage	51.880
	SRR8316908	Gold flowering stage	50.882
SRP132670	SRR6706286	Control	24.744
	SRR6706287	Light intensity 50%	24.186
	SRR6706288	Light intensity 20%	26.872
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.704
	CNS0095593	Slightly white alabastrum(diploid) 2	31.867
	CNS0095594	Slightly white alabastrum(diploid) 3	38.235
	CNS0095595	Whole white alabastrum(diploid) 2	38.978
	CNS0095596	Whole white alabastrum(diploid) 3	39.880
	CNS0095597	Whole white alabastrum(diploid) 4	42.614
	CNS0095598	Silvery flower (diploied) 1	37.213
	CNS0095599	Silvery flower (diploied) 2	32.484
	CNS0095600	Silvery flower (diploied) 3	59.259
	CNS0095601	Golden flower (diploid) 1	36.514
	CNS0095602	Golden flower (diploid) 2	57.156
	CNS0095603	Golden flower (diploid) 3	54.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.108
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.803
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.447
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.145
	CNS0095610	Silvery flower (tetraploid) 1	53.247
	CNS0095611	Silvery flower (tetraploid) 2	51.040
	CNS0095612	Silvery flower (tetraploid) 3	45.602
	CNS0095613	Golden flower (tetraploid) 1	43.750
	CNS0095614	Golden flower (tetraploid) 2	48.017
	CNS0095615	Golden flower (tetraploid) 3	63.922
CRA001975	CRR073297	Stem 1	23.446
	CRR073298	Stem 2	21.175
	CRR073299	Stem 3	15.362
	CRR073300	Leaf 1	24.303
	CRR073301	Leaf 2	20.491
	CRR073302	Leaf 3	16.412
	CRR073303	Juvenile bud 1	20.735
	CRR073304	Juvenile bud 2	17.245
	CRR073305	Juvenile bud 3	24.269
	CRR073306	Third green 1	14.614
	CRR073307	Third green 2	11.981
	CRR073308	Third green 3	15.125
	CRR073309	Second white 1	18.277
	CRR073310	Second white 2	18.275
	CRR073311	Second white 3	20.345
	CRR073312	Silver flowering 1	20.885
	CRR073313	Silver flowering 2	19.531
	CRR073314	Silver flowering 3	19.453
	CRR073315	Gold flowering 1	9.672
	CRR073316	Gold flowering 2	13.278
	CRR073317	Gold flowering 3	6.880
	CRR073318	Tawny withering 1	22.631
	CRR073319	Tawny withering 2	21.654
	CRR073320	Tawny withering 3	28.416