Detail information of GWHGAAZE031024


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN78643.10hypothetical protein VITISV_031742 [Vitis vinifera]
COGYP_003372407.10.000000003serine/threonine protein kinase
Swissprottr|Q8RWW0|ALE2_ARATH7E-155Receptor-like serine/threonine-protein kinase ALE2 (Precursor)
trEMBLtr|A5B4B7|A5B4B7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN78643.1}
TAIR10AT5G56890.12E-146Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5191528951917930-
GWHAAZE00000009mRNA5191528951917930-
GWHAAZE00000009exon5191783151917930-
GWHAAZE00000009exon5191737451917745-
GWHAAZE00000009exon5191695951917246-
GWHAAZE00000009exon5191644251916837-
GWHAAZE00000009exon5191607151916134-
GWHAAZE00000009exon5191528951915955-
GWHAAZE00000009CDS5191783151917930-
GWHAAZE00000009CDS5191737451917745-
GWHAAZE00000009CDS5191695951917246-
GWHAAZE00000009CDS5191644251916837-
GWHAAZE00000009CDS5191607151916134-
GWHAAZE00000009CDS5191528951915955-
Transcript Sequence

Network for GWHGAAZE031024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr3023875.80E-18
PF07714.18PK_Tyr_Ser-Thr4035122.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_Extensin

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.942
SRR3591706second leaf18.362
SRR3591707mature leaf34.662
SRR3591708Shoot apex15.498
SRR3591709Stem43.625
SRR3591710White floral bud14.229
SRR3591711White flower13.865
SRR3591712Green floral bud16.777
SRR3591713Yellow flower5.704
SRP173429 SRR8316895Juvenile bud stage 11.641
SRR8316896Juvenile bud stage 12.704
SRR8316897Juvenile bud stage 4.040
SRR8316894Third green stage 7.559
SRR8316900Third green stage 19.224
SRR8316901Third green stage 16.792
SRR8316898Complete white stage 9.770
SRR8316899Complete white stage 26.586
SRR8316903Complete white stage 18.564
SRR8316902Silver flowering stage7.900
SRR8316904Silver flowering stage13.682
SRR8316905Silver flowering stage5.922
SRR8316906Gold flowering stage 18.813
SRR8316907Gold flowering stage 20.403
SRR8316908Gold flowering stage 18.808
SRP132670SRR6706286Control14.832
SRR6706287Light intensity 50%15.824
SRR6706288Light intensity 20%15.775
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.869
CNS0095593Slightly white alabastrum(diploid) 213.082
CNS0095594Slightly white alabastrum(diploid) 38.298
CNS0095595Whole white alabastrum(diploid) 210.531
CNS0095596Whole white alabastrum(diploid) 310.385
CNS0095597Whole white alabastrum(diploid) 48.810
CNS0095598Silvery flower (diploied) 115.408
CNS0095599Silvery flower (diploied) 29.017
CNS0095600Silvery flower (diploied) 318.238
CNS0095601Golden flower (diploid) 17.484
CNS0095602Golden flower (diploid) 214.639
CNS0095603Golden flower (diploid) 312.810
CNS0095604Slightly white alabastrum(tetraploid) 114.648
CNS0095605Slightly white alabastrum(tetraploid) 213.212
CNS0095606Slightly white alabastrum(tetraploid) 329.950
CNS0095607Whole white alabastrum(tetraploid) 18.309
CNS0095608Whole white alabastrum(tetraploid) 27.417
CNS0095609Whole white alabastrum(tetraploid) 315.990
CNS0095610Silvery flower (tetraploid) 123.501
CNS0095611Silvery flower (tetraploid) 217.011
CNS0095612Silvery flower (tetraploid) 317.191
CNS0095613Golden flower (tetraploid) 113.280
CNS0095614Golden flower (tetraploid) 226.130
CNS0095615Golden flower (tetraploid) 317.619
CRA001975CRR073297Stem 123.069
CRR073298Stem 218.430
CRR073299Stem 319.936
CRR073300Leaf 120.013
CRR073301Leaf 219.301
CRR073302Leaf 314.206
CRR073303Juvenile bud 115.346
CRR073304Juvenile bud 216.248
CRR073305Juvenile bud 325.225
CRR073306Third green 121.746
CRR073307Third green 217.071
CRR073308Third green 324.716
CRR073309Second white 114.822
CRR073310Second white 221.229
CRR073311Second white 318.775
CRR073312Silver flowering 114.980
CRR073313Silver flowering 213.191
CRR073314Silver flowering 314.410
CRR073315Gold flowering 114.753
CRR073316Gold flowering 223.955
CRR073317Gold flowering 314.363
CRR073318Tawny withering 116.541
CRR073319Tawny withering 211.310
CRR073320Tawny withering 315.863