Gene detail

Detail information of GWHGAAZE031023

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654524.1	0	PREDICTED: protein HOTHEAD [Vitis vinifera]
COG	YP_003647731.1	4E-18	glucose-methanol-choline oxidoreductase
Swissprot	tr\|Q9S746\|HTH_ARATH	6E-178	Protein HOTHEAD (Precursor)
trEMBL	tr\|D7U005\|D7U005_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35951.3}
TAIR10	AT1G72970.1	1E-145	Glucose-methanol-choline (GMC) oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51913030	51914660	+
GWHAAZE00000009	mRNA	51913030	51914660	+
GWHAAZE00000009	exon	51913030	51913384	+
GWHAAZE00000009	exon	51913474	51913859	+
GWHAAZE00000009	exon	51913952	51914337	+
GWHAAZE00000009	exon	51914606	51914660	+
GWHAAZE00000009	CDS	51913030	51913384	+
GWHAAZE00000009	CDS	51913474	51913859	+
GWHAAZE00000009	CDS	51913952	51914337	+
GWHAAZE00000009	CDS	51914606	51914660	+

Transcript Sequence
>GWHTAAZE031057 CAAAAAGAAATATGTGTTGGTGCTAAAAATTTCTTGGCTTGCAGTGATATTAATAAAGTAGGTTGGGATGCTAAACTGGTGAATGAGTCTTACCCGTGGATCGAGAAACAAATTGTTCACCAGCCTAAGCTTGCACCCTGGCAGGTGGCGGTCAGGGATGGCCTTTTGGAAGCCGGGGTCTCACCTTTTAACGGATTCACCTTCGATCACTTATACGGAACCAAAGTCGGTGGGACCATTTTTGACAAGTATGGTCGCCGTCACACCGCTGCTGAACTACTTGCTTCCGCAAACCCTGCAAATCTTAATGTTTTAATTCATGCAACGGTCCAAAATATTATGTTCGATACGACAGGGAAGAAACCAAAGGCGGTTGGAGTTGTTTTTAAAGATGAAAATGGGAACCAACACCAAGCACTTCTCTCAAAGAGGAGGGGAAGCGAGGTTATATTGTCCTGCGGAGCTATTGGGAGCCCTCAAATGCTACTACTTAGTGGTATTGGACCAAAGGCCGACCTTAAGAAGCTAAACATCTCGGTGGTTCTTGACAACAAGTTTGTTGGGAAAGGCATGTCTGATAACCCCATGAACACGATCTTCGTTCCCACCGATGAAGCTGTGGAGCAATCGCTAATTCAAACTGTCGGAATTACGAAAAAGGGCGTGTACATCGAGGCTAGTAGTGGATTTGGGCAGTCCACAGATAGCATTCATTGTGATCATGGACTTATGTCAGCTGAGATTGGGCAGCTCTCCACCATTCCACCTAAGCAAAGAACAAAAGAAGCCATTCGGGACTACAGCAAAAGCAAACGAGACCTTCCACATGAAGTATTCAAGGGAGGTTTCATATTAGAAAAGATTGCGAGTCCCTTGTCGAAAGGGCATCTCAATCTGGTCAACACGAATGCTGATGACAATCCAAACGTCACCTTCAACTACTTCAGCCACCCACGAGACCTAAAGCGTTGCGTTGACGGTATTCGCCTTGTAAAGAAGCTCGTCAGCTCGAAACACTTCAACTTCACGTGTGACAAAAATAATTTTGAGAAGCTGCTTAATATGAGTGTCAAGGCTAATGTTAACCTTATACCTAGGCATACTAATGACACGAAATCCATAGAGCAGTACATGGGAGTGAAGATTCTAAGGCACAGGTTAGGAAGAGCTGCTGGCTTATAA

Network for GWHGAAZE031023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00732.20	GMC_oxred_N	70	195	1.40E-21
PF05199.14	GMC_oxred_C	291	376	2.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15403	ACE, HTH	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.063
	SRR3591706	second leaf	211.292
	SRR3591707	mature leaf	1.728
	SRR3591708	Shoot apex	144.580
	SRR3591709	Stem	4.368
	SRR3591710	White floral bud	5.468
	SRR3591711	White flower	3.569
	SRR3591712	Green floral bud	38.649
	SRR3591713	Yellow flower	0.188
SRP173429	SRR8316895	Juvenile bud stage	39.166
	SRR8316896	Juvenile bud stage	44.405
	SRR8316897	Juvenile bud stage	19.111
	SRR8316894	Third green stage	20.673
	SRR8316900	Third green stage	47.192
	SRR8316901	Third green stage	48.002
	SRR8316898	Complete white stage	0.805
	SRR8316899	Complete white stage	13.298
	SRR8316903	Complete white stage	1.960
	SRR8316902	Silver flowering stage	1.191
	SRR8316904	Silver flowering stage	2.301
	SRR8316905	Silver flowering stage	0.731
	SRR8316906	Gold flowering stage	1.954
	SRR8316907	Gold flowering stage	1.534
	SRR8316908	Gold flowering stage	0.914
SRP132670	SRR6706286	Control	33.141
	SRR6706287	Light intensity 50%	45.773
	SRR6706288	Light intensity 20%	58.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.931
	CNS0095593	Slightly white alabastrum(diploid) 2	14.161
	CNS0095594	Slightly white alabastrum(diploid) 3	15.934
	CNS0095595	Whole white alabastrum(diploid) 2	8.243
	CNS0095596	Whole white alabastrum(diploid) 3	9.896
	CNS0095597	Whole white alabastrum(diploid) 4	4.752
	CNS0095598	Silvery flower (diploied) 1	6.454
	CNS0095599	Silvery flower (diploied) 2	2.501
	CNS0095600	Silvery flower (diploied) 3	2.015
	CNS0095601	Golden flower (diploid) 1	4.438
	CNS0095602	Golden flower (diploid) 2	1.550
	CNS0095603	Golden flower (diploid) 3	1.785
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.557
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.455
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.814
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.928
	CNS0095610	Silvery flower (tetraploid) 1	0.535
	CNS0095611	Silvery flower (tetraploid) 2	1.078
	CNS0095612	Silvery flower (tetraploid) 3	0.871
	CNS0095613	Golden flower (tetraploid) 1	0.167
	CNS0095614	Golden flower (tetraploid) 2	0.977
	CNS0095615	Golden flower (tetraploid) 3	0.373
CRA001975	CRR073297	Stem 1	77.677
	CRR073298	Stem 2	68.608
	CRR073299	Stem 3	54.812
	CRR073300	Leaf 1	55.886
	CRR073301	Leaf 2	53.449
	CRR073302	Leaf 3	57.013
	CRR073303	Juvenile bud 1	13.954
	CRR073304	Juvenile bud 2	17.296
	CRR073305	Juvenile bud 3	13.187
	CRR073306	Third green 1	1.541
	CRR073307	Third green 2	0.540
	CRR073308	Third green 3	1.082
	CRR073309	Second white 1	0.660
	CRR073310	Second white 2	0.233
	CRR073311	Second white 3	0.090
	CRR073312	Silver flowering 1	0.173
	CRR073313	Silver flowering 2	0.282
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.337
	CRR073316	Gold flowering 2	0.437
	CRR073317	Gold flowering 3	1.087
	CRR073318	Tawny withering 1	3.002
	CRR073319	Tawny withering 2	1.578
	CRR073320	Tawny withering 3	2.587