Gene detail

Detail information of GWHGAAZE031016

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG24204.1	0	DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
COG	YP_004671991.1	6E-86	ATP-dependent RNA helicase DBP2
Swissprot	tr\|Q9C718\|RH20_ARATH	0	DEAD-box ATP-dependent RNA helicase 20
trEMBL	tr\|A0A061GD47\|A0A061GD47_THECC	0	DEA(D/H)-box RNA helicase family protein {ECO:0000313\|EMBL:EOY27072.1}
TAIR10	AT1G55150.1	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51793587	51800729	-
GWHAAZE00000009	mRNA	51793587	51800729	-
GWHAAZE00000009	exon	51800674	51800729	-
GWHAAZE00000009	exon	51800282	51800547	-
GWHAAZE00000009	exon	51799540	51799719	-
GWHAAZE00000009	exon	51799180	51799345	-
GWHAAZE00000009	exon	51798666	51798789	-
GWHAAZE00000009	exon	51797590	51797682	-
GWHAAZE00000009	exon	51797141	51797226	-
GWHAAZE00000009	exon	51796799	51797025	-
GWHAAZE00000009	exon	51796417	51796650	-
GWHAAZE00000009	exon	51796142	51796307	-
GWHAAZE00000009	exon	51795549	51795657	-
GWHAAZE00000009	exon	51793795	51794174	-
GWHAAZE00000009	exon	51793587	51793720	-
GWHAAZE00000009	CDS	51800674	51800729	-
GWHAAZE00000009	CDS	51800282	51800547	-
GWHAAZE00000009	CDS	51799540	51799719	-
GWHAAZE00000009	CDS	51799180	51799345	-
GWHAAZE00000009	CDS	51798666	51798789	-
GWHAAZE00000009	CDS	51797590	51797682	-
GWHAAZE00000009	CDS	51797141	51797226	-
GWHAAZE00000009	CDS	51796799	51797025	-
GWHAAZE00000009	CDS	51796417	51796650	-
GWHAAZE00000009	CDS	51796249	51796307	-
GWHAAZE00000009	three_prime_UTR	51796142	51796248	-
GWHAAZE00000009	three_prime_UTR	51795549	51795657	-
GWHAAZE00000009	three_prime_UTR	51793795	51794174	-
GWHAAZE00000009	three_prime_UTR	51793587	51793720	-

Transcript Sequence
>GWHTAAZE031050 ATGAGTCGTTACGACAGCCGCCCCGGCGACCCAGGTTCGTATCGTGACCGGAAAAGTGATTCAGGACTTGGTGGGAGTTCGAGTAACGGTGGATTCCGGTCCTCATCGAGCAGGAAGGTCGACTTCGACACTACGGAGTCACCTCGAAAGTTGGATTTGGAAGGGCTGACTCCGTTTGAGAAGAACTTCTATGTAGAGTCTCCCACTATATCCGCAATGTCCGAGAGCGAGGTGGACGAGTACAGGCGGCGTAGAGAAATCACCGTTGAAGGTCGGGACGTGCCGAAGCCTGTTAAAACTTTCGAAGACATACGGTTTCCAGATTATGTTATGGACGAAGTTCTAAAAGCTGGCTTTTCTGAACCTACGGCTATTCAAGCTCAAGGATGGCCAATGGCTTTAAAGGGCCGCGATCTCATTGGTATTGCAGAAACAGGATCAGGCAAGACACTTGCCTACCTACTGCCTGCAATTGTCCATGTTAATGCACAGCCAATCTTAGCTCATGGAGATGGTCCAATTGTGTTAGTTTTGGCTCCAACTCGAGAACTTGCTGTTCAAATACAACAAGAAGCTACTAAATTTGGTTCATCATCAAGGATTAAGAATACCTGCATATATGGTGGGGTTCCAAAGGGACCTCAAGTTCGTGACCTTCAGAAAGGTAGGTTAATTGATATGTTGGAATCTCATCATACAAACTTGAGAAGGGTCACATACTTGGTGTTGGACGAGGCGGATCGAATGCTAGACATGGGCTTTGATCCTCAGATTCGAAAAATTGTTTCTCAGATTCGACCGGATCGTCAAACTTTGTACTGGAGTGCTACATGGCCTAAGGAGGTTGAACAACTTGCAAGGCAATTCCTGTACAACCCATACAAGGTGATTATTGGTTCTTCAGATTTGAAGGCTAACCATGCAATTTGCCAGCATGTGGACATTGTTTCTGAGAATAAAAAATATAATAAGCTGGTAAAGTTGTTGGAGGATATTATGGATGGAAGCCGGATTCTGATATTTATGGACACCAAAAAAGGGTGTGACCAAATCACTAGGCAGCTACGAATGGATGGTTGGCCGGCTCTCTCTATTCATGGAGACAAGAGTCAAGCAGAAAGAGATTGGGTCCTCTCGGAATTCAAAGCTGGTAAAAGTCCTATAATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTTAAATATGTGATAAACTATGACTTTCCGGGATCTCTCGAGGATTACGTTCATCGCATTGGTAGAACAGGAAGGGCAGGGGCAACAGGAACTGCATACACTTTCTTCACAGCTGCAAATGCGAGATTTGCAAAAGAACTCATTAACATACTTGAGGAGGCTGGACAGAAGGTCAGTCCTGAGCTGGTGGCAATGGGGCGTGGTGCGCCTCCTCCCCCTTCAGGTCATGGAAATTTTCGAGACCGTGGACGGGGTTACGGCGTTGGACGCCCCTGGAGCTAATTAATTAAATTAACCTATGCTTGGAATCACCTGCAATATTTCGAAGGTTGTGGTTTAGAAGTCTGATGTCAGGCTGCTGCTTGCTATCATCCTCCAAAGCTGATTCTTGCCAGATGAGTTGCTACTTTCTGCATTGATGTCAGCTTGGCGTATCTGAAGGAAGGATTGCAGGTGTGCCATTTGAGAAGGGGCCGCCATCTGATCTCAACTTCATAGGGTCAAAAATCCCCTCTCGGTGCATTCTGAAGTGGCAAATGTAAGCGATCTGATCAACAATAGCAAACAGGAACAAGAGATCTTTGCAACTATGTGGTGAATATAGGCGGTATAGCTTTTGATCTCTTTCCCCTTACTCGTGCTTTTGTGTCTGGGAAGAAACCACCACCCTCCACATCATCCTCGACGTAACCATCCTCCCTTATAGTCAAAGGATAAGTGACTAGATGAACACCTTCCATATCTATTACTTCATCACCACAATATATTTTCCACATTTGATCTCCTATCGAACAGACATGCTGCACGCATCCCAATTTCTGAGGCTCTTGGAAAAATTCTTTGGCTTGTCCAGTATGCTCATACCACAACGACATTCGTGTCGCGTTGCCCATCCATAGATCGCTGGTTGATGTTAGCGGATCCTATCAACATGTATGTATCATCCACTGTAGCAAAAACAAATGCAAGCCACACATAAAAGTGTAGTGTATGGGAGTTAATATGTAAGCCT

Network for GWHGAAZE031016

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	123	285	1.10E-40
PF00271.32	Helicase_C	321	430	4.70E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.461
	SRR3591706	second leaf	14.855
	SRR3591707	mature leaf	12.596
	SRR3591708	Shoot apex	20.373
	SRR3591709	Stem	17.538
	SRR3591710	White floral bud	16.013
	SRR3591711	White flower	22.378
	SRR3591712	Green floral bud	15.393
	SRR3591713	Yellow flower	20.582
SRP173429	SRR8316895	Juvenile bud stage	13.504
	SRR8316896	Juvenile bud stage	16.322
	SRR8316897	Juvenile bud stage	9.935
	SRR8316894	Third green stage	6.069
	SRR8316900	Third green stage	17.866
	SRR8316901	Third green stage	18.714
	SRR8316898	Complete white stage	9.276
	SRR8316899	Complete white stage	27.681
	SRR8316903	Complete white stage	12.190
	SRR8316902	Silver flowering stage	9.614
	SRR8316904	Silver flowering stage	14.497
	SRR8316905	Silver flowering stage	5.769
	SRR8316906	Gold flowering stage	21.815
	SRR8316907	Gold flowering stage	21.084
	SRR8316908	Gold flowering stage	23.192
SRP132670	SRR6706286	Control	13.941
	SRR6706287	Light intensity 50%	15.721
	SRR6706288	Light intensity 20%	15.482
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.431
	CNS0095593	Slightly white alabastrum(diploid) 2	13.378
	CNS0095594	Slightly white alabastrum(diploid) 3	10.386
	CNS0095595	Whole white alabastrum(diploid) 2	11.370
	CNS0095596	Whole white alabastrum(diploid) 3	10.605
	CNS0095597	Whole white alabastrum(diploid) 4	10.617
	CNS0095598	Silvery flower (diploied) 1	19.845
	CNS0095599	Silvery flower (diploied) 2	17.557
	CNS0095600	Silvery flower (diploied) 3	20.243
	CNS0095601	Golden flower (diploid) 1	18.170
	CNS0095602	Golden flower (diploid) 2	20.661
	CNS0095603	Golden flower (diploid) 3	20.262
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.063
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.751
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.446
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.108
	CNS0095610	Silvery flower (tetraploid) 1	22.498
	CNS0095611	Silvery flower (tetraploid) 2	25.105
	CNS0095612	Silvery flower (tetraploid) 3	21.873
	CNS0095613	Golden flower (tetraploid) 1	16.281
	CNS0095614	Golden flower (tetraploid) 2	19.658
	CNS0095615	Golden flower (tetraploid) 3	22.153
CRA001975	CRR073297	Stem 1	16.448
	CRR073298	Stem 2	13.937
	CRR073299	Stem 3	11.982
	CRR073300	Leaf 1	18.566
	CRR073301	Leaf 2	15.257
	CRR073302	Leaf 3	12.534
	CRR073303	Juvenile bud 1	13.577
	CRR073304	Juvenile bud 2	11.421
	CRR073305	Juvenile bud 3	18.878
	CRR073306	Third green 1	6.405
	CRR073307	Third green 2	6.863
	CRR073308	Third green 3	6.436
	CRR073309	Second white 1	9.097
	CRR073310	Second white 2	9.529
	CRR073311	Second white 3	10.341
	CRR073312	Silver flowering 1	7.482
	CRR073313	Silver flowering 2	7.323
	CRR073314	Silver flowering 3	5.599
	CRR073315	Gold flowering 1	11.537
	CRR073316	Gold flowering 2	12.953
	CRR073317	Gold flowering 3	11.219
	CRR073318	Tawny withering 1	11.375
	CRR073319	Tawny withering 2	10.211
	CRR073320	Tawny withering 3	10.582