Gene detail

Detail information of GWHGAAZE031015

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011010902.1	0	PREDICTED: phospholipase D epsilon [Populus euphratica]
COG	YP_003981721.1	7E-34	phospholipase D
Swissprot	tr\|Q9C888\|PLDE1_ARATH	0	Phospholipase D epsilon
trEMBL	tr\|B9MWR1\|B9MWR1_POPTR	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT1G55180.1	0	phospholipase D alpha 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51791238	51794085	+
GWHAAZE00000009	mRNA	51791238	51794085	+
GWHAAZE00000009	exon	51791238	51791324	+
GWHAAZE00000009	exon	51791480	51792040	+
GWHAAZE00000009	exon	51792119	51793316	+
GWHAAZE00000009	exon	51793652	51794085	+
GWHAAZE00000009	CDS	51791238	51791324	+
GWHAAZE00000009	CDS	51791480	51792040	+
GWHAAZE00000009	CDS	51792119	51793316	+
GWHAAZE00000009	CDS	51793652	51794085	+

Transcript Sequence
>GWHTAAZE031049 ATGGAAGGAAAGAACAAGTTCTTCCATGGAACACTTGAAGCTACCATCTTCCATGCCACACCTTATGCACCTCCTTTCCCCCTTAATTGCATATTTGGCAAGGGAATGACCTCCTACGTGACCATCAAGATAAACAATAAAAAGATAGCATCAACAAGCCATGAATGTGATAGAGTATGGAACCAAACCTTACAAATCCTCTGTGCTCATCCTCTCGACTCAACAATCACAATTACACTGAAGACAAAGTGCTCCGTCTTGGGGAGAATCCACGTCGAGGCTCAACAAATATTAGACAAAGCAACTTTGATCAATGGGTTCTTTCCACTCTGCATGGAAAATGGAAAACCAAACACGGAAATGAAATTACGCTTCATGTTATGGTTTAAGCCGGCAGAACGTGAACCAAGCTGGGGCCAATTACTTGATAATGGCGGATTCCACGGGCTAAAAAGCGCTACATTTCCACAAAGATCCAACTGTAGTGTTACAATGTATCAAGACACACACCATTGCTCTACTTTCCAACCCCCATTTAATCTTTGTGGACCGCCAAGAAGACTATGGGAGGACGTATATAAAGCAATTGAAGGTGCAAAGCATTTGATTTACATTGCAGGGTGGTCTTTTAACCCCAAAATGGTGCTGGTACGTGATTCTCAAACAGTTATTCCACACGCCCGAGGAGTGAAGCTTGGCGAATTGTTGAAGAGGAAAGCAGAGGAAGGCGTGGCAGTGAGAATCATGATTTGGGACGACGAAACATCATTACCCATCATCAAGAACAAAGGAGTAATGAGAACCTGCGGTGAAGATGCCTTTGCCTACTTCAAACACACCAAAGTAGTATGCAGATTGTGCCCTAGATTACACCACAAGTTCCCCACACTCTTCACCCACCATCAGAAAACCATAACAGTGGACACCTGTAGATGCTTCTCTTCAAGTAACCGCGAAATAACAAGTTTTGTTGGGGGTGTAGATCTTTGTGATGGACGCTATGACACAGAACAACATTCCCTGTTTCATACACTAAACACCGAATCCCATTCTCAAGACTTCTATCAGATAAACCTTGCTGGAGCTAGTCTTCATAAGGGCGGCCCAAGAGAGCCTTGGCATGATGCTCACGCGTGTATTACTGGGGAAGCTGCTTGGGATGTACTCAAAAATTTCGAGCAACGGTGGATAAAGCAATGTGATCCTTCTTTACTAGTCCCAGTAAGTGCCTTAAAAGAACTCACTTGCGAGACCATTCCTTCAAGCATACCCAGTGACAGTGATTGGAAAGTTCAAGTATTTCGTTCTATCAACTATGTGTCAGCAAGCAATCTACAGAAAAACTTAACAGTTGAGCGAAGTATCCATGACGCTTATGTAGAAGCAATTAGGCGCGCAGAGAGATTCATCTACATTGAGAACCAATATTTCATCGGAGGATGTCATTTATGGGAGAAAGATCAGCATTGTGGCTGCAGCAACTTAATCCCTATTGAGATTGCACTAAAAGTAGTGAATAAAATCAAAGCAAAGGAGAGGTTTGCAGTGTATATTTTGATACCAATGTGGCCAGAAGGAGTATTGGATAGCGAATCTGTACAAGATATATTGCACTGGACAAGGGAAACAATGAAGATGATGTACAGGTTAATAGGAGATGCTATACAAGAAATTGGAGAAGCAGGGCATCCAAAAGACTACTTGAATTTCTTCTGCCTTGCTAACAGGGAAGAGGTGGGCAAAGGAGAGTTTGTTCCTTCACACTCGCCTCATCCTGGAACTCAGTACTGGAATGCTCAAAAGCACAGGAGGTTCATGGTTTATGTCCATTCGAAGCTCATGATAGTGGATGATACATACATGTTGATAGGATCCGCTAACATCAACCAGCGATCTATGGATGGGCAACGCGACACTGAAATAGCAATAGGATGTTACCAGACGAAAAATGGGGAACACAAAATATGTAACGGTGATATTCATGCATACCGAATGTCGTTGTGGTATGAGCATACTGGACAAGCCAAAGAATTTTTCCAAGAGCCTCAGAAATTGGGATGCGTGCAGCATGTCTGTTCGATAGGAGATCAAATGTGGAAAATATATTGTGGTGATGAAGTAATAGATATGGAAGGTGTTCATCTAGTCACTTATCCTTTGACTATAAGGGAGGATGGTTACGTCGAGGATGATGTGGAGGGTGGTGGTTTCTTCCCAGACACAAAAGCACGAGTAAGGGGAAAGAGATCAAAAGCTATACCGCCTATATTCACCACATAG

Network for GWHGAAZE031015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	12	109	0.00034
PF13091.7	PLDc_2	605	643	5.30E-07
PF12357.9	PLD_C	677	748	2.80E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.862
	SRR3591706	second leaf	2.360
	SRR3591707	mature leaf	0.754
	SRR3591708	Shoot apex	2.168
	SRR3591709	Stem	5.357
	SRR3591710	White floral bud	2.354
	SRR3591711	White flower	3.469
	SRR3591712	Green floral bud	2.889
	SRR3591713	Yellow flower	2.140
SRP173429	SRR8316895	Juvenile bud stage	1.118
	SRR8316896	Juvenile bud stage	1.253
	SRR8316897	Juvenile bud stage	0.696
	SRR8316894	Third green stage	0.733
	SRR8316900	Third green stage	2.038
	SRR8316901	Third green stage	1.975
	SRR8316898	Complete white stage	0.337
	SRR8316899	Complete white stage	2.017
	SRR8316903	Complete white stage	0.902
	SRR8316902	Silver flowering stage	0.436
	SRR8316904	Silver flowering stage	0.979
	SRR8316905	Silver flowering stage	0.291
	SRR8316906	Gold flowering stage	0.996
	SRR8316907	Gold flowering stage	1.378
	SRR8316908	Gold flowering stage	1.037
SRP132670	SRR6706286	Control	1.621
	SRR6706287	Light intensity 50%	1.695
	SRR6706288	Light intensity 20%	1.748
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.076
	CNS0095593	Slightly white alabastrum(diploid) 2	0.869
	CNS0095594	Slightly white alabastrum(diploid) 3	0.773
	CNS0095595	Whole white alabastrum(diploid) 2	0.688
	CNS0095596	Whole white alabastrum(diploid) 3	0.838
	CNS0095597	Whole white alabastrum(diploid) 4	0.737
	CNS0095598	Silvery flower (diploied) 1	1.967
	CNS0095599	Silvery flower (diploied) 2	0.719
	CNS0095600	Silvery flower (diploied) 3	1.379
	CNS0095601	Golden flower (diploid) 1	1.540
	CNS0095602	Golden flower (diploid) 2	1.529
	CNS0095603	Golden flower (diploid) 3	1.432
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.373
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.581
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.634
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.412
	CNS0095610	Silvery flower (tetraploid) 1	1.306
	CNS0095611	Silvery flower (tetraploid) 2	0.740
	CNS0095612	Silvery flower (tetraploid) 3	1.267
	CNS0095613	Golden flower (tetraploid) 1	1.047
	CNS0095614	Golden flower (tetraploid) 2	1.076
	CNS0095615	Golden flower (tetraploid) 3	1.920
CRA001975	CRR073297	Stem 1	1.229
	CRR073298	Stem 2	1.163
	CRR073299	Stem 3	0.323
	CRR073300	Leaf 1	1.148
	CRR073301	Leaf 2	1.284
	CRR073302	Leaf 3	0.375
	CRR073303	Juvenile bud 1	0.200
	CRR073304	Juvenile bud 2	0.033
	CRR073305	Juvenile bud 3	0.129
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.153
	CRR073311	Second white 3	0.058
	CRR073312	Silver flowering 1	0.022
	CRR073313	Silver flowering 2	0.027
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.114
	CRR073316	Gold flowering 2	0.516
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.365
	CRR073319	Tawny withering 2	1.386
	CRR073320	Tawny withering 3	0.523