Detail information of GWHGAAZE031011


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004486807.10PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cicer arietinum]
Swissprottr|Q39247|2ABB_ARATH0Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
trEMBLtr|I1M5D8|I1M5D8_SOYBN0Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256|RuleBase:RU331113}
TAIR10AT1G17720.20Protein phosphatase 2A, regulatory subunit PR55

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5174227751751669-
GWHAAZE00000009mRNA5174227751751669-
GWHAAZE00000009exon5174227751742413-
GWHAAZE00000009exon5174252651742593-
GWHAAZE00000009exon5174293951743016-
GWHAAZE00000009exon5174312651743217-
GWHAAZE00000009exon5174331351743381-
GWHAAZE00000009exon5174367651743799-
GWHAAZE00000009exon5174402451744147-
GWHAAZE00000009exon5174513051745248-
GWHAAZE00000009exon5174628151746372-
GWHAAZE00000009exon5174715551747358-
GWHAAZE00000009exon5174806051748179-
GWHAAZE00000009exon5174851951748617-
GWHAAZE00000009exon5174873751748840-
GWHAAZE00000009exon5175150151751669-
GWHAAZE00000009CDS5175150151751669-
GWHAAZE00000009CDS5174873751748840-
GWHAAZE00000009CDS5174851951748617-
GWHAAZE00000009CDS5174806051748179-
GWHAAZE00000009CDS5174715551747358-
GWHAAZE00000009CDS5174628151746372-
GWHAAZE00000009CDS5174513051745248-
GWHAAZE00000009CDS5174402451744147-
GWHAAZE00000009CDS5174367651743799-
GWHAAZE00000009CDS5174331351743381-
GWHAAZE00000009CDS5174312651743217-
GWHAAZE00000009CDS5174293951743016-
GWHAAZE00000009CDS5174252651742593-
GWHAAZE00000009CDS5174227751742413-
Transcript Sequence

Network for GWHGAAZE031011

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402442800.15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04354PPP2R2 mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Cell cycle - yeastmap04111
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728

Gene Ontology

GO term OntologyName
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005515molecular_functionprotein binding
GO:0019888molecular_functionprotein phosphatase regulator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.940
SRR3591706second leaf20.684
SRR3591707mature leaf23.445
SRR3591708Shoot apex29.090
SRR3591709Stem34.931
SRR3591710White floral bud30.989
SRR3591711White flower30.441
SRR3591712Green floral bud30.988
SRR3591713Yellow flower29.258
SRP173429 SRR8316895Juvenile bud stage 19.090
SRR8316896Juvenile bud stage 27.715
SRR8316897Juvenile bud stage 13.843
SRR8316894Third green stage 12.644
SRR8316900Third green stage 32.242
SRR8316901Third green stage 35.136
SRR8316898Complete white stage 14.482
SRR8316899Complete white stage 41.174
SRR8316903Complete white stage 22.658
SRR8316902Silver flowering stage13.034
SRR8316904Silver flowering stage22.801
SRR8316905Silver flowering stage9.408
SRR8316906Gold flowering stage 30.630
SRR8316907Gold flowering stage 28.512
SRR8316908Gold flowering stage 32.976
SRP132670SRR6706286Control18.573
SRR6706287Light intensity 50%18.617
SRR6706288Light intensity 20%21.034
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.542
CNS0095593Slightly white alabastrum(diploid) 217.332
CNS0095594Slightly white alabastrum(diploid) 316.698
CNS0095595Whole white alabastrum(diploid) 217.926
CNS0095596Whole white alabastrum(diploid) 314.817
CNS0095597Whole white alabastrum(diploid) 413.865
CNS0095598Silvery flower (diploied) 119.444
CNS0095599Silvery flower (diploied) 215.991
CNS0095600Silvery flower (diploied) 331.642
CNS0095601Golden flower (diploid) 112.804
CNS0095602Golden flower (diploid) 228.409
CNS0095603Golden flower (diploid) 328.734
CNS0095604Slightly white alabastrum(tetraploid) 125.646
CNS0095605Slightly white alabastrum(tetraploid) 218.041
CNS0095606Slightly white alabastrum(tetraploid) 335.591
CNS0095607Whole white alabastrum(tetraploid) 116.648
CNS0095608Whole white alabastrum(tetraploid) 217.417
CNS0095609Whole white alabastrum(tetraploid) 330.056
CNS0095610Silvery flower (tetraploid) 129.397
CNS0095611Silvery flower (tetraploid) 228.604
CNS0095612Silvery flower (tetraploid) 329.952
CNS0095613Golden flower (tetraploid) 117.254
CNS0095614Golden flower (tetraploid) 225.927
CNS0095615Golden flower (tetraploid) 324.741
CRA001975CRR073297Stem 127.343
CRR073298Stem 224.435
CRR073299Stem 319.843
CRR073300Leaf 127.651
CRR073301Leaf 225.674
CRR073302Leaf 322.843
CRR073303Juvenile bud 119.341
CRR073304Juvenile bud 219.570
CRR073305Juvenile bud 320.576
CRR073306Third green 115.629
CRR073307Third green 213.652
CRR073308Third green 315.591
CRR073309Second white 110.205
CRR073310Second white 213.323
CRR073311Second white 315.096
CRR073312Silver flowering 19.674
CRR073313Silver flowering 210.557
CRR073314Silver flowering 310.645
CRR073315Gold flowering 15.901
CRR073316Gold flowering 214.636
CRR073317Gold flowering 37.618
CRR073318Tawny withering 127.609
CRR073319Tawny withering 225.237
CRR073320Tawny withering 327.932