Detail information of GWHGAAZE031006


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97941.11.3595E-135unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TNW6|A0A068TNW6_COFCA5E-136Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97941.1}
TAIR10AT1G17730.11E-89vacuolar protein sorting 46.1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5166707551667686-
GWHAAZE00000009mRNA5166707551667686-
GWHAAZE00000009exon5166707551667686-
GWHAAZE00000009CDS5166707551667686-
Transcript Sequence

Network for GWHGAAZE031006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf7111731.10E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12197CHMP1, VPS46, DID2 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf183.192
SRR3591706second leaf44.662
SRR3591707mature leaf42.895
SRR3591708Shoot apex121.507
SRR3591709Stem159.082
SRR3591710White floral bud112.180
SRR3591711White flower108.202
SRR3591712Green floral bud105.477
SRR3591713Yellow flower69.149
SRP173429 SRR8316895Juvenile bud stage 117.270
SRR8316896Juvenile bud stage 159.761
SRR8316897Juvenile bud stage 89.026
SRR8316894Third green stage 45.178
SRR8316900Third green stage 102.301
SRR8316901Third green stage 122.461
SRR8316898Complete white stage 61.804
SRR8316899Complete white stage 263.301
SRR8316903Complete white stage 88.780
SRR8316902Silver flowering stage49.760
SRR8316904Silver flowering stage61.380
SRR8316905Silver flowering stage36.542
SRR8316906Gold flowering stage 76.005
SRR8316907Gold flowering stage 71.236
SRR8316908Gold flowering stage 91.796
SRP132670SRR6706286Control129.542
SRR6706287Light intensity 50%115.814
SRR6706288Light intensity 20%115.809
CNP0000432CNS0095592Slightly white alabastrum(diploid) 192.871
CNS0095593Slightly white alabastrum(diploid) 2123.655
CNS0095594Slightly white alabastrum(diploid) 3100.736
CNS0095595Whole white alabastrum(diploid) 291.537
CNS0095596Whole white alabastrum(diploid) 356.982
CNS0095597Whole white alabastrum(diploid) 476.689
CNS0095598Silvery flower (diploied) 1147.179
CNS0095599Silvery flower (diploied) 2137.711
CNS0095600Silvery flower (diploied) 3159.446
CNS0095601Golden flower (diploid) 1173.081
CNS0095602Golden flower (diploid) 2185.019
CNS0095603Golden flower (diploid) 3174.888
CNS0095604Slightly white alabastrum(tetraploid) 151.454
CNS0095605Slightly white alabastrum(tetraploid) 254.233
CNS0095606Slightly white alabastrum(tetraploid) 392.094
CNS0095607Whole white alabastrum(tetraploid) 158.380
CNS0095608Whole white alabastrum(tetraploid) 247.714
CNS0095609Whole white alabastrum(tetraploid) 349.860
CNS0095610Silvery flower (tetraploid) 184.873
CNS0095611Silvery flower (tetraploid) 2115.564
CNS0095612Silvery flower (tetraploid) 3201.384
CNS0095613Golden flower (tetraploid) 192.233
CNS0095614Golden flower (tetraploid) 276.094
CNS0095615Golden flower (tetraploid) 3128.749
CRA001975CRR073297Stem 1232.860
CRR073298Stem 2245.369
CRR073299Stem 3361.324
CRR073300Leaf 1251.223
CRR073301Leaf 2308.303
CRR073302Leaf 3333.775
CRR073303Juvenile bud 1353.583
CRR073304Juvenile bud 2282.599
CRR073305Juvenile bud 3521.667
CRR073306Third green 1169.864
CRR073307Third green 2232.033
CRR073308Third green 3184.990
CRR073309Second white 1172.844
CRR073310Second white 2123.636
CRR073311Second white 390.777
CRR073312Silver flowering 1135.393
CRR073313Silver flowering 2144.651
CRR073314Silver flowering 3131.141
CRR073315Gold flowering 1390.794
CRR073316Gold flowering 2419.734
CRR073317Gold flowering 3511.206
CRR073318Tawny withering 1534.665
CRR073319Tawny withering 2511.184
CRR073320Tawny withering 3557.666